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Sample GSM16324 Query DataSets for GSM16324
Status Public on May 10, 2004
Title GC2_021964_LT2_2D652_3
Sample type genomic
 
Channel 1
Source name 021964 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Saintpaul; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Saintpaul; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description genomic comparison 021964/LT2
User - PCheng
Date_of_Scan = Sat Mar 15 12:25:49 2003
 
Submission date Feb 03, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 1740 40940 1698.684814 87.529411 1448.305542 226.742111 183.686844 16500 45.402683 0.941603 0.959198 0.99366 7.491704 0.847842 2049.858154 17.661764 1498.75769 67.08551 158.37558 14100 45.402683 0.890746 0.959778 0.997818 30.5559 0.893863 1 1 1 1 1 1 1 1 1 1 1 1 1 1611.155403 2032.19639 0.016034605 0.009237186 1.735875514 0.239518577
2 1980 40940 677.176941 90.823532 567.085632 230.325531 176.97937 13000 37.822472 0.92605 0.981682 0.992508 2.940086 0.784023 913.95575 32.470589 789.194885 105.495483 179.124664 11300 37.822472 0.9382 0.977798 0.997025 8.663459 0.856137 1 1 1 1 1 0 1 1 1 1 1 1 1 586.353409 881.485161 0.00583553 0.00400672 1.456435544 0.163291269
3 2230 40950 3171.674561 58.132355 2777.128662 134.870071 173.161194 16900 31.490517 0.932 0.924644 0.995911 23.516519 0.86698 6295.714355 14.426471 4812.34668 59.063416 166.029037 15400 31.490517 0.900909 0.892487 0.998596 106.592453 0.879947 1 1 1 1 1 1 1 1 1 1 1 1 1 3113.542206 6281.287884 0.030986718 0.028551091 1.085307688 0.035552879
4 2490 40950 1214.918579 110.367645 1085.443726 288.102478 184.895889 17200 40.280479 0.940364 0.971405 0.990547 4.216967 0.83915 2622.16333 12.485294 1867.635864 48.437527 164.87471 14700 40.280479 0.913286 0.949638 0.998154 54.134955 0.882046 1 1 1 1 1 1 1 1 1 1 1 1 1 1104.550934 2609.678036 0.010992756 0.011862082 0.926713815 -0.033054363
5 2740 40960 2715.097656 53.470589 2294.00293 142.969406 185.067963 17400 37.197182 0.955732 0.941689 0.995338 18.99076 0.845331 4586.644531 14.205882 3182.128418 72.222824 165.837204 14900 37.197182 0.905308 0.923805 0.998695 63.506857 0.880296 1 1 1 1 1 1 1 1 1 1 1 1 1 2661.627067 4572.438649 0.026489151 0.020783653 1.274518483 0.105346138
6 2990 40960 1822.28125 114.382355 1594.213989 265.606781 181.945694 16000 37.197182 0.959448 0.95562 0.99279 6.860824 0.851008 3788.441406 36.558823 2748.652832 119.139626 177.876389 14500 37.197182 0.929525 0.933098 0.995796 31.798332 0.858407 1 1 1 1 1 1 1 1 1 1 1 1 1 1707.898895 3751.882583 0.016997419 0.017053882 0.996689171 -0.00144026
7 3240 40960 2270.91333 109.838234 2217.207275 285.959259 187.630173 17300 37.197182 0.94962 0.940285 0.990524 7.941388 0.840672 4351.506836 28.17647 3417.531494 142.197464 167.935287 14600 37.197182 0.90656 0.920113 0.998268 30.60186 0.876481 1 1 1 1 1 1 1 1 1 1 1 1 1 2161.075096 4323.330366 0.021507537 0.019651352 1.094455873 0.039198256
8 3480 40960 2206.852539 69.147057 2154.128906 173.654343 186.609512 18300 27.436581 0.952487 0.946739 0.994919 12.708306 0.842528 4023.882813 17.941177 3443.600586 80.688248 172.424332 16200 27.436581 0.933595 0.91848 0.997063 49.869503 0.868319 1 1 1 1 1 1 1 1 1 1 1 1 1 2137.705482 4005.941636 0.021274957 0.018208687 1.168396034 0.067590074
9 3730 40970 2446.835205 69.588234 2182.104004 216.526672 184.723648 17000 26.718519 0.94374 0.946045 0.99472 11.300387 0.845957 3536.943848 10.588235 2937.056396 54.768505 166.794159 16000 26.718519 0.925883 0.929802 0.999046 64.579887 0.878556 1 1 1 1 1 1 1 1 1 1 1 1 1 2377.246971 3526.355613 0.023658932 0.016028767 1.476029431 0.169095017
10 3990 40970 1672.786987 89.529411 1572.0271 248.550873 184.205978 16900 36.670746 0.959641 0.954506 0.993111 6.730159 0.846898 3570.513428 28.92647 2768.13208 129.811264 159.377335 15000 36.670746 0.921948 0.92662 0.994667 27.505421 0.892041 1 1 1 1 1 1 1 1 1 1 1 1 1 1583.257576 3541.586958 0.015756959 0.016098 0.978814706 -0.009299514
11 4230 40980 1705.077881 75.882355 1471.56897 180.690506 171.127197 15400 29.580273 0.913131 0.958824 0.995071 9.436455 0.870678 4003.20874 19.661764 3298.606934 72.930267 176.43898 15800 29.580273 0.936922 0.921135 0.997604 54.89091 0.86102 1 1 1 1 1 1 1 1 1 1 1 1 1 1629.195526 3983.546976 0.016214144 0.018106894 0.895468032 -0.047949914
12 4480 40980 1769.524536 110.279411 1468.631104 236.074478 182.12056 18300 29.580273 0.942344 0.957649 0.992989 7.49562 0.85069 3060.69751 6.367647 1857.204102 30.821539 167.935287 16200 29.580273 0.896388 0.951324 0.999252 99.303851 0.876481 1 1 1 1 1 1 1 1 1 1 1 1 1 1659.245125 3054.329863 0.016513205 0.013883212 1.189436969 0.075341433
13 4740 40990 3834.933594 249.323532 3836.904053 767.181274 181.244553 18100 43.20845 0.947803 0.908173 0.980438 4.998732 0.852283 7035.817871 64.102943 6369.970215 472.432037 179.124664 17000 43.20845 0.924053 0.855972 0.998695 14.892762 0.856137 1 1 1 1 1 1 1 1 1 1 1 1 1 3585.610062 6971.714928 0.035684851 0.031689372 1.126082626 0.051570258
14 4980 40990 2247.023438 70.897057 2067.658203 179.320877 181.595459 17100 35.158295 0.95007 0.942368 0.994431 12.530741 0.851645 4222.655762 14.661765 3414.861328 59.694397 167.935287 15400 35.158295 0.882877 0.919273 0.998291 70.737891 0.876481 1 1 1 1 1 1 1 1 1 1 1 1 1 2176.126381 4207.993997 0.021657331 0.0191271 1.13228518 0.053955823
15 5240 40990 4064.744629 31.882353 2935.381836 108.856819 183.860046 18400 43.20845 0.954239 0.924866 0.996658 37.340285 0.847527 8785.037109 25.5 6274.106445 86.857491 179.124664 18700 43.20845 0.94013 0.868324 0.99781 101.143114 0.856137 1 1 1 1 1 1 1 1 1 1 1 1 1 4032.862276 8759.537109 0.040136012 0.039815774 1.008042992 0.003479055
16 5480 40990 3026.156006 48.985294 2564.694092 159.177414 178.41243 18600 35.158295 0.966903 0.938271 0.995239 19.011215 0.857432 6037.552734 33.25 4301.629395 130.575806 163.5177 17000 35.158295 0.917892 0.902191 0.995132 46.237913 0.884513 1 1 1 1 1 1 1 1 1 1 1 1 1 2977.170712 6004.302734 0.029629516 0.027292077 1.085645353 0.035687978
17 5740 41000 1930.757446 92.485291 1691.900146 204.821915 184.378693 16900 49.275585 0.951332 0.947891 0.993813 9.426518 0.846584 4535.445313 23.867647 3622.151367 79.131653 174.62558 16400 49.275585 0.907216 0.917236 0.997223 57.315185 0.864317 1 1 1 1 1 1 1 1 1 1 1 1 1 1838.272155 4511.577666 0.018294925 0.020507015 0.892130098 -0.049571809
18 6000 41000 419.366211 61.735294 503.797668 286.367126 171.49881 7100 57.087193 0.938039 0.984665 0.99511 1.464436 0.390516 740.522705 16.691177 1309.656494 60.509838 160.769302 4400 57.087193 0.898272 0.95298 0.998161 12.238055 0.882727 1 1 1 1 1 0 1 1 1 1 1 1 1 357.630917 723.831528 0.003559229 0.003290118 1.081793534 0.034144381
19 1740 41190 1350.910889 76.75 1320.572876 208.683243 186.779999 15700 45.402683 0.969344 0.966019 0.993874 6.4735 0.842218 2488.736084 11.838235 2149.312012 85.424423 156.75946 12500 45.402683 0.883008 0.944511 0.999245 29.133777 0.896801 1 1 1 1 1 1 1 1 1 1 1 1 1 1274.160889 2476.897849 0.012680755 0.011258541 1.126323109 0.051662995
20 1990 41200 1474.481445 104.279411 1630.543091 220.039948 184.723648 16200 40.280479 0.958234 0.956474 0.993736 6.700972 0.845957 2824.079102 36.617645 2614.795898 125.548355 171.684311 13900 40.280479 0.894898 0.937157 0.995705 22.493955 0.869665 1 1 1 1 1 1 1 1 1 1 1 1 1 1370.202034 2787.461457 0.013636579 0.012670183 1.076273278 0.031922558

Total number of rows: 5184

Table truncated, full table size 1741 Kbytes.




Supplementary data files not provided
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