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Sample GSM16439 Query DataSets for GSM16439
Status Public on May 10, 2004
Title GC2_SARB32_LT2_2D722_3
Sample type genomic
 
Channel 1
Source name SARB32 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Muenchen; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description genomic comparison SARB32/LT2
User - PCheng
Date_of_Scan = Wed Apr 23 15:05:03 2003
 
Submission date Feb 04, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL224
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2340 41500 3801.198975 44.794117 2691.17627 136.175537 172.054718 19600 24.023443 0.915338 0.932495 0.99601 27.913964 0.868991 2397.684814 24.514706 1670.160767 74.001717 182.295258 20300 24.023443 0.935225 0.957436 0.997932 32.400395 0.850372 1 1 1 1 1 1 1 1 1 1 1 1 1 3756.404858 2373.170108 0.018161243 0.019166019 0.947575141 -0.023386341
2 2590 41510 756.016479 72.485291 681.289001 176.413559 181.068848 18200 29.699535 0.941814 0.978035 0.994568 4.285478 0.840903 585.590881 14 497.522583 43.253849 178.768906 17600 29.699535 0.947446 0.984749 0.998497 13.538469 0.856784 1 1 1 1 1 1 1 1 1 1 1 1 1 683.531188 571.590881 0.003304696 0.00461624 0.715884861 -0.145156822
3 2830 41500 11202.41211 53.794117 9608.996094 135.707611 183.339935 22800 15.574194 0.936941 0.801559 0.995934 82.548149 0.848473 7291.602051 46.676472 5117.630859 172.617462 176.258484 20100 15.574194 0.936681 0.878662 0.997849 42.241393 0.861348 1 1 1 1 1 1 1 1 1 1 1 1 1 11148.61799 7244.925579 0.053900676 0.058510926 0.921207024 -0.035642759
4 3100 41510 5145.774902 25.264706 3347.723145 86.409065 173.161194 20000 37.63818 0.937386 0.912956 0.997566 59.551332 0.86698 3151.397949 41.485294 2142.348633 103.746895 179.302277 20600 37.63818 0.953715 0.947624 0.996811 30.375829 0.855814 1 1 1 1 1 1 1 1 1 1 1 1 1 5120.510196 3109.912655 0.024756339 0.025116044 0.985678261 -0.006264822
5 3350 41490 5744.719238 67.794121 3804.08252 125.071869 184.205978 22800 31.729475 0.95756 0.901085 0.996826 45.931346 0.846898 3177.9375 24.705883 2154.029541 87.169945 185.583237 22400 31.729475 0.947574 0.943649 0.996529 36.456803 0.844394 1 1 1 1 1 1 1 1 1 1 1 1 1 5676.925117 3153.231617 0.02744646 0.025465893 1.077773318 0.032527428
6 3600 41490 5430.957031 44.10294 3441.966797 115.762253 181.42009 23200 31.729475 0.947499 0.91806 0.996506 46.914749 0.851963 2977.577881 44.617645 1883.134277 111.4468 185.067963 22500 31.729475 0.951232 0.948311 0.996712 26.717482 0.845331 1 1 1 1 1 1 1 1 1 1 1 1 1 5386.854091 2932.960236 0.026044042 0.023686954 1.099509971 0.041199172
7 3830 41500 4173.47168 40.294117 3689.988037 114.288986 185.754669 21200 15.574194 0.958835 0.906296 0.99662 36.516832 0.844082 3183.947754 29.029411 2490.784912 82.892662 173.711777 19100 15.574194 0.927602 0.934799 0.997063 38.41049 0.865979 1 1 1 1 1 1 1 1 1 1 1 1 1 4133.177563 3154.918343 0.019982841 0.025479516 0.784270852 -0.105533925
8 4090 41500 4641.922852 63.279411 4024.968994 161.390213 180.54068 20700 24.023443 0.959645 0.910439 0.995384 28.762109 0.853562 2752.862549 26.382353 2176.493896 78.898956 177.697342 18900 24.023443 0.947755 0.942986 0.997765 34.890988 0.858732 1 1 1 1 1 1 1 1 1 1 1 1 1 4578.643441 2726.480196 0.022136553 0.022019395 1.005320669 0.002304612
9 4330 41500 4319.537598 85.132355 4346.266113 171.066269 188.476501 21400 15.574194 0.966851 0.894577 0.995453 25.250668 0.839134 2643.659668 91.882355 2503.637207 185.565018 182.64415 19100 15.574194 0.956279 0.940605 0.994957 14.246541 0.849738 1 1 1 1 1 1 1 1 1 1 1 1 1 4234.405243 2551.777313 0.020472251 0.020608473 0.993389995 -0.002880219
10 4580 41500 2584.888916 81.441177 2840.708984 157.372681 186.609512 21600 15.574194 0.956275 0.921867 0.995277 16.425271 0.842528 1269.878906 89.808823 1382.081299 168.676605 179.656982 19000 15.574194 0.958653 0.956001 0.995323 7.528483 0.855169 1 1 1 1 1 1 1 1 1 1 1 1 1 2503.447739 1180.070083 0.01210352 0.009530394 1.269991646 0.103800864
11 4820 41490 3467.687012 77.808823 3205.11792 151.748642 185.239883 21400 1.74605 0.964946 0.917076 0.995491 22.851519 0.845018 1641.53186 77.544121 1461.984619 175.425323 182.992371 18800 1.74605 0.955288 0.959373 0.994827 9.35744 0.849105 1 1 1 1 1 1 1 1 1 1 1 1 1 3389.878189 1563.987739 0.016389182 0.012630961 1.297540383 0.113120883
12 5070 41480 2235.567871 87.044121 2009.615112 217.086166 190.32518 24300 9.905159 0.970499 0.935478 0.995369 10.298067 0.835772 1786.991577 46.735294 1821.019775 129.250839 189.150833 23700 9.905159 0.968359 0.940369 0.996231 13.825764 0.837908 1 1 1 1 1 1 1 1 1 1 1 1 1 2148.52375 1740.256283 0.010387555 0.014054528 0.739089586 -0.131302917
13 5330 41480 8408.274414 43.132355 7065.375977 113.506248 186.097076 24400 15.253933 0.960408 0.84623 0.995926 74.077635 0.84346 4616.584961 97.205879 3642.685791 225.323349 181.945694 22400 15.253933 0.946011 0.915604 0.992035 20.488711 0.851008 1 1 1 1 1 1 1 1 1 1 1 1 1 8365.142059 4519.379082 0.040443292 0.036499071 1.108063589 0.044564684
14 5590 41490 3037.454834 54.779411 2562.366943 123.783371 188.476501 22200 21.729918 0.958205 0.932312 0.996674 24.538472 0.839134 1503.440918 88.205879 1120.748901 185.852737 180.54068 18600 21.729918 0.92675 0.968376 0.995445 8.08942 0.853562 1 1 1 1 1 1 1 1 1 1 1 1 1 2982.675423 1415.235039 0.014420462 0.011429615 1.261675175 0.100947558
15 5820 41500 8585.941406 142.044113 6232.668457 217.686371 189.487106 25800 10.391593 0.96532 0.84433 0.99379 39.441796 0.837296 6048.348145 106.558823 4352.78418 178.19931 191.658463 24400 10.391593 0.96626 0.879868 0.995255 33.941479 0.833348 1 1 1 1 1 1 1 1 1 1 1 1 1 8443.897293 5941.789322 0.040824053 0.047986634 0.850737992 -0.070204172
16 6070 41490 6824.226563 142.338242 5971.03125 224.368866 188.307541 24300 1.74605 0.966868 0.865173 0.993195 30.415212 0.839441 4154.596191 107.485291 3350.841309 199.034576 189.822784 21800 1.74605 0.965267 0.91909 0.99511 20.873741 0.836686 1 1 1 1 1 1 1 1 1 1 1 1 1 6681.888321 4047.1109 0.032305197 0.032684974 0.988380668 -0.005075758
17 6330 41480 2700.529053 92.352943 2654.838623 182.103043 189.990387 24000 15.253933 0.965148 0.934235 0.99398 14.829676 0.836381 1435.887695 31.544117 1220.533081 95.799767 186.438858 18700 15.253933 0.958939 0.96933 0.997467 14.988426 0.842838 1 1 1 1 1 1 1 1 1 1 1 1 1 2608.17611 1404.343578 0.012609855 0.011341655 1.111817933 0.046033675
18 6590 41480 5210.550781 135.544113 4176.300781 273.716064 190.492355 26700 23.81707 0.967779 0.89463 0.991722 19.036335 0.835468 2744.102051 69.176468 2188.303955 169.402283 184.551254 24500 23.81707 0.952161 0.938271 0.994972 16.198731 0.84627 1 1 1 1 1 1 1 1 1 1 1 1 1 5075.006668 2674.925583 0.024536341 0.021603034 1.135782172 0.055295048
19 2340 41750 3330.35791 31.441177 3843.96875 94.998093 182.295258 20400 24.023443 0.955694 0.936691 0.997154 35.057103 0.850372 2342.129883 64.514709 2642.377441 154.57901 180.89296 17700 24.023443 0.944238 0.95813 0.995796 15.151668 0.852922 1 1 1 1 1 1 1 1 1 1 1 1 1 3298.916733 2277.615174 0.015949407 0.018394305 0.867083937 -0.061938859
20 2590 41750 4335.555664 22.014706 3625.9104 59.657852 180.89296 21600 24.023443 0.937292 0.913582 0.998367 72.67368 0.852922 2821.962158 32.514706 2084.835938 89.647652 174.989761 18500 24.023443 0.907986 0.944267 0.997513 31.478372 0.863655 1 1 1 1 1 1 1 1 1 1 1 1 1 4313.540958 2789.447452 0.020854852 0.022527927 0.925733279 -0.033514124

Total number of rows: 5184

Table truncated, full table size 1743 Kbytes.




Supplementary data files not provided
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