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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Oct 01, 2015 |
| Title |
KO-BL, rep 2 |
| Sample type |
RNA |
| |
|
| Source name |
p63 KO bladder epithelial stem cell culture
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6j
tissue: bladder
cell type: bladder epithelial stem cell culture
genotype/variation: p63 knockout
|
| Extracted molecule |
total RNA |
| Extraction protocol |
PicoPure® RNA Isolation Kit (life technologies), RNeasy Mini Kit (Qiagen)
|
| Label |
Biotin
|
| Label protocol |
Encore® Biotin Module (Nugen)
|
| |
|
| Hybridization protocol |
GeneChip® Hybridization, Wash, and Stain Kit (affymetrix)
|
| Scan protocol |
GeneChip® Hybridization, Wash, and Stain Kit (affymetrix)
|
| Description |
Gene expression data from stem cells
|
| Data processing |
Expression console, Partek Genome Suite 6.6
MoEx-1_0-st-v1.r2.pgf
MoEx-1_0-st-v1.r2.dt1.mm9.core.mps
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| |
|
| Submission date |
Apr 27, 2015 |
| Last update date |
Oct 01, 2015 |
| Contact name |
Frank McKeon |
| E-mail(s) |
mckeon.xian@gmail.com
|
| Phone |
8608372486
|
| Organization name |
University of Houston
|
| Department |
Biology and Biochemistry
|
| Street address |
3455 Cullen Blvd
|
| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77004 |
| Country |
USA |
| |
|
| Platform ID |
GPL6096 |
| Series (1) |
| GSE68276 |
Cell culture of p63 knock out and wild type bladder epithelial stem cell |
|
| Data table header descriptions |
| ID_REF |
|
| VALUE |
signal intensity (log2 value) RMA |
| Data table |
| ID_REF |
VALUE |
| 6823768 |
6.91656 |
| 4321421 |
6.49727 |
| 6958212 |
3.76644 |
| 6933677 |
9.21886 |
| 6933678 |
5.48185 |
| 5079769 |
7.28013 |
| 6933679 |
5.19314 |
| 6983639 |
3.96031 |
| 6958216 |
9.20117 |
| 4821017 |
7.33821 |
| 4371380 |
3.51635 |
| 5614804 |
3.56526 |
| 4345860 |
5.1255 |
| 6873744 |
6.91229 |
| 4321437 |
7.24152 |
| 5384985 |
3.21642 |
| 6763840 |
3.3582 |
| 6763841 |
5.0815 |
| 6933697 |
4.8457 |
| 6958232 |
3.20503 |
Total number of rows: 23332
Table truncated, full table size 362 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GSM1666961_KO-BL2.CEL.gz |
19.6 Mb |
(ftp)(http) |
CEL |
| Processed data included within Sample table |
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