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Sample GSM1675057 Query DataSets for GSM1675057
Status Public on May 06, 2015
Title becic-00235: PN107: HG_U95B
Sample type RNA
 
Source name P107_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T3a, pN N0, pM MX
organismpart: Prostate
histology: ALI no, ECI focal, SVI no, SMI no
prostatetissue: adjacent normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 164.852 A 0.5
AFFX-MurIL10_at 124.961 A 0.52976
AFFX-MurIL4_at 13.2247 A 0.672921
AFFX-MurFAS_at 32.1429 A 0.470241
AFFX-BioB-5_at 1200.66 P 0.0020226
AFFX-BioB-M_at 2562.79 P 0.00010954
AFFX-BioB-3_at 1052.55 P 0.000972149
AFFX-BioC-5_at 3657.1 P 7.00668e-05
AFFX-BioC-3_at 2826.39 P 6.02111e-05
AFFX-BioDn-5_at 2352.01 P 5.16732e-05
AFFX-BioDn-3_at 11809.3 P 7.00668e-05
AFFX-CreX-5_at 35041.4 P 4.42873e-05
AFFX-CreX-3_at 49797.2 P 4.42873e-05
AFFX-BioB-5_st 170.387 A 0.175328
AFFX-BioB-M_st 266.961 A 0.205732
AFFX-BioB-3_st 58.2693 A 0.672921
AFFX-BioC-5_st 14.9389 A 0.834139
AFFX-BioC-3_st 128.037 A 0.327065
AFFX-BioDn-5_st 322.912 A 0.156732
AFFX-BioDn-3_st 568.412 P 0.0044838

Total number of rows: 12620

Table truncated, full table size 353 Kbytes.




Supplementary file Size Download File type/resource
GSM1675057_PN107_u95b.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM1675057_PN107_u95bmas5.CHP.gz 4.4 Mb (ftp)(http) CHP
GSM1675057_PN107_u95bmas5.CHP.txt.gz 127.9 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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