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Sample GSM1675075 Query DataSets for GSM1675075
Status Public on May 06, 2015
Title becic-00235: PN39: HG_U95B
Sample type RNA
 
Source name P39_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_7
diseasestaging: pT T3a, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI focal, SVI no, SMI yes
prostatetissue: adjacent normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 33.3616 A 0.904333
AFFX-MurIL10_at 50.1518 A 0.699394
AFFX-MurIL4_at 23.3182 A 0.617401
AFFX-MurFAS_at 55.594 A 0.574038
AFFX-BioB-5_at 9677.33 P 0.000126798
AFFX-BioB-M_at 19049.9 P 4.42873e-05
AFFX-BioB-3_at 11093 P 4.42873e-05
AFFX-BioC-5_at 10415.5 P 5.16732e-05
AFFX-BioC-3_at 8832.94 P 4.42873e-05
AFFX-BioDn-5_at 9645.81 P 4.42873e-05
AFFX-BioDn-3_at 38548.1 P 5.16732e-05
AFFX-CreX-5_at 88415.8 P 4.42873e-05
AFFX-CreX-3_at 100552 P 4.42873e-05
AFFX-BioB-5_st 268.954 A 0.340661
AFFX-BioB-M_st 631.262 M 0.0542134
AFFX-BioB-3_st 672.06 A 0.175328
AFFX-BioC-5_st 70.1878 A 0.749204
AFFX-BioC-3_st 23.8567 A 0.804734
AFFX-BioDn-5_st 484.131 A 0.123572
AFFX-BioDn-3_st 843.168 P 0.026111

Total number of rows: 12620

Table truncated, full table size 351 Kbytes.




Supplementary file Size Download File type/resource
GSM1675075_PN39_u95b.CEL.gz 2.7 Mb (ftp)(http) CEL
GSM1675075_PN39_u95bmas5.CHP.gz 4.6 Mb (ftp)(http) CHP
GSM1675075_PN39_u95bmas5.CHP.txt.gz 127.7 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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