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Sample GSM1675231 Query DataSets for GSM1675231
Status Public on May 06, 2015
Title becic-00235: PT10: HG_U95B
Sample type RNA
 
Source name P10_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_4
diseasestaging: pT T2a, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI no, SVI no, SMI no
prostatetissue: tumor
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 233.705 A 0.340661
AFFX-MurIL10_at 43.2931 A 0.559354
AFFX-MurIL4_at 43.8558 A 0.794268
AFFX-MurFAS_at 44.411 A 0.891021
AFFX-BioB-5_at 3763.04 P 0.00179591
AFFX-BioB-M_at 8858.88 P 4.42873e-05
AFFX-BioB-3_at 2264.84 P 0.000146581
AFFX-BioC-5_at 9811.29 P 8.14279e-05
AFFX-BioC-3_at 9078.88 P 0.000662269
AFFX-BioDn-5_at 6779.78 P 6.02111e-05
AFFX-BioDn-3_at 45368.2 P 4.42873e-05
AFFX-CreX-5_at 115342 P 4.42873e-05
AFFX-CreX-3_at 127089 P 4.42873e-05
AFFX-BioB-5_st 479.422 A 0.195266
AFFX-BioB-M_st 676.358 M 0.0464816
AFFX-BioB-3_st 840.317 P 0.026111
AFFX-BioC-5_st 135.334 A 0.58862
AFFX-BioC-3_st 756.428 M 0.0542134
AFFX-BioDn-5_st 1534.53 P 0.0138105
AFFX-BioDn-3_st 3389.72 P 0.000195116

Total number of rows: 12620

Table truncated, full table size 348 Kbytes.




Supplementary file Size Download File type/resource
GSM1675231_PT10_U95B.CEL.gz 2.6 Mb (ftp)(http) CEL
GSM1675231_PT10_U95Bmas5.0.CHP.gz 2.0 Mb (ftp)(http) CHP
GSM1675231_PT10_U95Bmas5.0.CHP.txt.gz 128.1 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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