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Sample GSM1675452 Query DataSets for GSM1675452
Status Public on May 06, 2015
Title becic-00235: PD009: HG_U95B
Sample type RNA
 
Source name D009_normal_prostate
Organism Homo sapiens
Characteristics Sex: male
age: 50
diseasestate: Normal
tumorgrading: --
diseasestaging: --
organismpart: Prostate
histology: at least 60% glandular no pathological alterations
prostatetissue: normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 25.2365 A 0.860518
AFFX-MurIL10_at 14.5817 A 0.891021
AFFX-MurIL4_at 14.567 A 0.645547
AFFX-MurFAS_at 78.7054 A 0.327079
AFFX-BioB-5_at 1264.78 P 0.0012475
AFFX-BioB-M_at 2415.42 P 4.42873e-05
AFFX-BioB-3_at 1316.7 P 0.000224668
AFFX-BioC-5_at 3805.15 P 7.00668e-05
AFFX-BioC-3_at 3225.02 P 5.16732e-05
AFFX-BioDn-5_at 2727.02 P 4.42873e-05
AFFX-BioDn-3_at 21035.8 P 5.16732e-05
AFFX-CreX-5_at 38843.1 P 4.42873e-05
AFFX-CreX-3_at 56886.8 P 4.42873e-05
AFFX-BioB-5_st 83.2443 A 0.340661
AFFX-BioB-M_st 46.9845 A 0.772364
AFFX-BioB-3_st 39.6513 A 0.876428
AFFX-BioC-5_st 53.3235 A 0.631562
AFFX-BioC-3_st 28.8354 A 0.58862
AFFX-BioDn-5_st 198.922 A 0.262827
AFFX-BioDn-3_st 399.057 P 0.0151826

Total number of rows: 12620

Table truncated, full table size 353 Kbytes.




Supplementary file Size Download File type/resource
GSM1675452_PD009_u95b.CEL.gz 2.6 Mb (ftp)(http) CEL
GSM1675452_PD009_u95bmas5.CHP.gz 4.5 Mb (ftp)(http) CHP
GSM1675452_PD009_u95bmas5.CHP.txt.gz 127.5 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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