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Sample GSM1675461 Query DataSets for GSM1675461
Status Public on May 06, 2015
Title becic-00235: PD012: HG_U95B
Sample type RNA
 
Source name D012_normal_prostate
Organism Homo sapiens
Characteristics Sex: male
age: 16
diseasestate: Normal
tumorgrading: --
diseasestaging: --
organismpart: Prostate
histology: at least 60% glandular no pathological alterations
prostatetissue: normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 27.8183 A 0.783496
AFFX-MurIL10_at 22.1656 A 0.824672
AFFX-MurIL4_at 34.0937 A 0.58862
AFFX-MurFAS_at 13.1481 A 0.783476
AFFX-BioB-5_at 601.432 P 0.00844047
AFFX-BioB-M_at 1135.4 P 0.000509415
AFFX-BioB-3_at 649.995 P 0.00618711
AFFX-BioC-5_at 2323.33 P 0.00010954
AFFX-BioC-3_at 1939.67 P 7.00668e-05
AFFX-BioDn-5_at 1729.01 P 0.000126798
AFFX-BioDn-3_at 11203.1 P 8.14279e-05
AFFX-CreX-5_at 21044.2 P 4.42873e-05
AFFX-CreX-3_at 33551.8 P 4.42873e-05
AFFX-BioB-5_st 47.7737 A 0.52976
AFFX-BioB-M_st 26.828 A 0.973889
AFFX-BioB-3_st 37.8123 A 0.937071
AFFX-BioC-5_st 35.5068 A 0.916408
AFFX-BioC-3_st 16.0084 A 0.794268
AFFX-BioDn-5_st 43.3822 A 0.470241
AFFX-BioDn-3_st 229.877 A 0.216524

Total number of rows: 12620

Table truncated, full table size 352 Kbytes.




Supplementary file Size Download File type/resource
GSM1675461_PD012_u95b.CEL.gz 2.5 Mb (ftp)(http) CEL
GSM1675461_PD012_u95bmas5.CHP.gz 4.4 Mb (ftp)(http) CHP
GSM1675461_PD012_u95bmas5.CHP.txt.gz 129.0 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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