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Sample GSM1685 Query DataSets for GSM1685
Status Public on Jun 27, 2002
Title 110 Antigens, mix #1, 12-9-99
Sample type protein
 
Channel 1
Source name Reference antigens
Organism Homo sapiens
Extracted molecule protein
 
Channel 2
Source name Test antigens
Organism Homo sapiens
Extracted molecule protein
 
 
Description Category: Protein array
Subcategory: Antibody
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = 8cl110
 
Submission date May 23, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL173
Series (2)
GSE43 Antibody Arrays Figure 1
GSE50 Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 67 65 2 62 2 60 60 33 1 34 .057 0 -1 .818 9 3 1 2 1 .5 .056 1297 384 205 227 267 289 -1
2 66 65 60 60 60 33 33 .003 0 .8 8 4 0 .002 1297 384 204 226 302 324
3 68 67 62 63 62 34 34 .037 0 .875 5 3 0 .025 1297 384 204 226 337 359
4 68 67 3 64 65 64 35 35 .036 0 .897 9 2 0 .025 1297 384 204 226 372 394
5 72 66 5 64 66 66 36 35 .012 0 .667 12 1 .002 1297 384 203 225 407 429
6 68 66 3 65 1 65 64 35 1 36 .043 0 -1.585 .652 11 4 3 3 .333 .333 .03 1297 384 203 225 442 464 -1.585
7 68 66 5 62 65 65 36 34 0 .632 11 2 1297 384 203 225 478 500
8 68 67 65 66 66 36 36 0 .667 8 3 0 1297 384 202 224 513 535
9 67 65 3 65 1 65 64 35 1 36 0 -1.585 .7 9 3 3 3 .333 .333 1297 384 202 224 548 570 -1.585
10 67 66 48 66 2 65 64 35 1 36 .001 0 -5.585 .6 12 3 24 48 .042 .021 0 1297 384 202 224 583 605 -5.585
11 67 66 2 65 66 66 36 36 .018 0 .6 9 2 .012 1297 384 201 223 618 640
12 83 70 132 71 71 71 39 39 .025 0 .546 15 3 0 0 1297 384 201 223 653 675
13 68 66 3 59 61 60 33 32 0 .696 11 2 1297 384 240 262 267 289
14 67 66 4 59 59 59 32 32 0 .556 10 4 0 1297 384 239 261 302 324
15 67 66 5 61 62 61 34 34 .248 0 .622 10 3 0 .109 1297 384 239 261 337 359
16 68 66 5 62 63 62 34 34 .008 0 .556 13 3 0 .006 1297 384 239 261 372 394
17 73 67 3 62 63 63 35 34 .009 0 .667 9 3 .001 1297 384 238 260 408 430
18 70 69 5 60 63 63 35 33 .026 0 .667 15 2 .014 1297 384 238 260 443 465
19 70 69 21 57 63 64 35 31 0 .514 32 1 1297 384 238 260 478 500
20 69 69 20 54 63 62 34 30 0 .529 28 1 1297 384 238 260 513 535

Total number of rows: 2304

Table truncated, full table size 220 Kbytes.




Supplementary data files not provided
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