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Sample GSM1687 Query DataSets for GSM1687
Status Public on Jun 27, 2002
Title 110 Antigens, mix #3, 12-9-99
Sample type protein
 
Channel 1
Source name Reference antigens
Organism Homo sapiens
Extracted molecule protein
 
Channel 2
Source name Test antigens
Organism Homo sapiens
Extracted molecule protein
 
 
Description Category: Protein array
Subcategory: Antibody
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = 8cl112
 
Submission date May 23, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL173
Series (2)
GSE43 Antibody Arrays Figure 1
GSE50 Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 73 71 1 75 4 72 71 55 4 59 .049 0 2 .909 8 6 .25 .25 4 4 .04 1161 349 209 230 256 277 2
2 72 69 2 65 1 65 64 50 1 51 0 -1 .824 9 3 2 2 .5 .5 931 349 208 229 291 312 -1
3 70 69 64 64 64 50 50 .004 0 .909 5 3 0 .003 931 349 208 229 326 347
4 66 65 4 63 66 66 51 49 .056 0 .546 12 2 .04 931 349 208 229 361 382
5 72 67 66 67 66 51 51 0 .75 8 3 0 907 349 207 228 396 417
6 67 66 3 66 67 67 52 51 .002 0 .75 11 4 .002 907 349 207 228 431 452
7 67 67 71 1 71 70 55 55 0 .818 8 3 0 900 349 207 228 466 487
8 73 66 5 70 1 70 69 54 1 55 0 -2.322 .714 8 4 5 5 .2 .2 847 349 206 227 501 522 -2.322
9 67 65 4 75 1 74 74 58 1 59 .007 0 -2 .842 9 2 4 4 .25 .25 .005 847 349 206 227 536 557 -2
10 69 68 5 75 78 78 61 59 0 1 11 2 847 349 206 227 571 592
11 67 66 5 76 80 79 62 59 .016 0 .7 13 1 .013 813 349 205 226 606 627
12 71 70 80 82 81 63 62 .069 0 1.286 5 2 0 .064 811 349 205 226 641 662
13 71 70 7 77 4 75 73 57 3 60 0 -1.222 .654 13 5 1.75 2.333 .571 .429 1161 349 244 265 256 277 -1.222
14 70 69 2 63 64 64 50 49 .004 0 .75 10 2 .002 913 349 243 264 291 312
15 66 66 1 60 62 61 48 47 .021 0 .514 9 2 .014 913 349 243 264 326 347
16 66 63 7 62 63 62 48 48 .106 0 .714 15 5 0 .06 913 349 243 264 361 382
17 111 65 2 63 87 66 51 49 .833 0 .6 10 2 .452 902 349 242 263 396 417
18 87 65 8 63 78 65 51 49 .856 0 .474 14 2 .575 880 349 242 263 431 452
19 70 67 25 73 2 72 71 55 2 57 .056 0 -3.644 .492 36 5 12.5 12.5 .08 .08 .035 878 349 242 263 466 487 -3.644
20 69 67 21 70 72 71 55 55 0 .647 28 4 856 349 241 262 501 522

Total number of rows: 2304

Table truncated, full table size 219 Kbytes.




Supplementary data files not provided
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