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Sample GSM16875 Query DataSets for GSM16875
Status Public on May 10, 2004
Title GC2_SARA25_LT2_4D405_2
Sample type genomic
 
Channel 1
Source name SARA25 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Saintpaul; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Saintpaul; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description genomic comparison SARA25/LT2
User - PCheng
Date_of_Scan = Wed Jan 21 12:23:41 2004
 
Submission date Feb 13, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL548
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2300 22610 945.596313 129.220581 858.686462 250.67717 190.992981 21800 13.147259 0.976241 0.976273 0.992981 3.772168 0.826755 369.13559 67.867645 367.043091 132.021927 178.055252 11800 13.147259 0.943537 0.987846 0.995979 2.796017 0.745605 1 1 1 1 1 1 1 1 1 1 1 0 1 816.375732 301.267945 0.007675141 0.003195487 2.401869068 0.380549329
2 2550 22610 2407.299561 129.926468 2454.916016 226.939285 193.476746 24700 28.145544 0.974553 0.925064 0.993179 10.607681 0.830042 1529.811523 36.323528 1166.606567 89.432945 178.946869 19100 28.145544 0.928495 0.96653 0.997337 17.105682 0.85646 1 1 1 1 1 1 1 1 1 1 1 1 1 2277.373093 1493.487995 0.02141068 0.015841118 1.351588903 0.130844617
3 2770 22610 2432.057129 152.691177 2113.672119 208.50679 191.49231 22800 13.147259 0.969466 0.945145 0.994713 11.664163 0.83365 2124.25 58.779411 1807.826172 157.309738 179.302277 18400 13.147259 0.961287 0.947929 0.995804 13.503614 0.855814 1 1 1 1 1 1 1 1 1 1 1 1 1 2279.365952 2065.470589 0.021429415 0.021908019 0.978153942 -0.00959279
4 3000 22610 564.700012 171.411758 374.211243 271.047882 183.166229 17000 8.149232 0.965007 0.988029 0.993546 2.083396 0.555572 1817.439453 53.367645 1348.174316 138.036545 182.295258 19800 8.149232 0.937279 0.963379 0.995506 13.166364 0.850372 1 1 1 1 1 0 1 1 1 1 1 1 1 393.288254 1764.071808 0.003697492 0.018711145 0.197609075 -0.704193115
5 3240 22610 1159.060303 193.882355 932.954529 307.45575 189.487106 19900 13.147259 0.96139 0.975067 0.990585 3.769844 0.826685 895.397583 84.573532 790.356995 178.453171 178.768906 16600 13.147259 0.960134 0.977547 0.995987 5.017549 0.856784 1 1 1 1 1 1 1 1 1 1 1 1 1 965.177948 810.824051 0.009074102 0.008600243 1.055098332 0.023292936
6 3470 22610 2712.978027 178.485291 2427.37915 274.934479 189.319046 22700 8.149232 0.967719 0.94178 0.992119 9.867726 0.837602 2064.151855 47.60294 1647.714355 109.458931 187.969162 19100 8.149232 0.96224 0.957886 0.99733 18.857775 0.840056 1 1 1 1 1 1 1 1 1 1 1 1 1 2534.492736 2016.548915 0.023827985 0.021389117 1.114023771 0.046894458
7 3710 22610 2808.486328 154.838242 2988.398926 243.110474 186.950348 22000 13.147259 0.957832 0.921951 0.991234 11.552305 0.841908 2406.668457 58.191177 2234.607666 135.91188 183.166229 17800 13.147259 0.952655 0.939049 0.995872 17.707565 0.848789 1 1 1 1 1 1 1 1 1 1 1 1 1 2653.648086 2348.47728 0.024948222 0.024909813 1.001541924 0.000669133
8 3940 22610 2047.253174 81.308823 2280.968994 158.92778 192.321655 23300 8.149232 0.97563 0.952873 0.995827 12.881657 0.832142 1833.326172 41.514706 1492.270386 107.033195 180.54068 18700 8.149232 0.935875 0.961426 0.997673 17.128576 0.853562 1 1 1 1 1 1 1 1 1 1 1 1 1 1965.944351 1791.811466 0.018482788 0.019005374 0.972503285 -0.012108923
9 4170 22610 949.602783 123.25 1042.803589 191.624741 189.150833 21400 3.15746 0.96904 0.97657 0.995155 4.955533 0.837908 904.035278 32.85294 1508.634399 94.06353 181.244553 17000 3.15746 0.953241 0.971703 0.997116 9.610901 0.852283 1 1 1 1 1 1 1 1 1 1 1 1 1 826.352783 871.182338 0.00776894 0.009240451 0.840753338 -0.0753314
10 4410 22610 4321.004395 130.264709 4052.305664 266.647644 191.326019 23800 8.149232 0.966747 0.90992 0.993324 16.204922 0.833953 3847 48.64706 3036.273682 155.569229 178.055252 19600 8.149232 0.941336 0.929955 0.995041 24.728541 0.858081 1 1 1 1 1 1 1 1 1 1 1 1 1 4190.739686 3798.35294 0.039399159 0.040288344 0.977929476 -0.009692464
11 4650 22620 3592.548096 162.367645 3599.919434 249.637466 190.826248 23900 16.341206 0.965521 0.917694 0.992134 14.391061 0.834861 3427.641357 38.60294 2717.28125 108.548103 178.233932 18400 16.341206 0.936413 0.926727 0.996864 31.577165 0.857756 1 1 1 1 1 1 1 1 1 1 1 1 1 3430.180451 3389.038417 0.032248776 0.035946829 0.897124348 -0.047147356
12 4880 22620 2819.017822 163.073532 2658.847656 258.158478 191.824478 22500 12.67259 0.968533 0.937775 0.99321 10.919718 0.833046 2608.446289 63.029411 2091.341309 142.172592 179.656982 18600 12.67259 0.940074 0.94561 0.995926 18.34704 0.855169 1 1 1 1 1 1 1 1 1 1 1 1 1 2655.94429 2545.416878 0.024969809 0.02699871 0.924851936 -0.03392779
13 5120 22610 3993.515869 194.676468 3427.532715 250.196014 188.307541 21900 13.147259 0.961814 0.917397 0.993843 15.961549 0.839441 3183.435547 57.441177 2520.246826 173.424103 176.077789 18600 13.147259 0.934926 0.936966 0.993568 18.356362 0.861677 1 1 1 1 1 1 1 1 1 1 1 1 1 3798.839401 3125.99437 0.035714716 0.033156776 1.077146837 0.03227491
14 5350 22610 1207.141602 158.338242 1091.501099 289.94223 194.133713 23300 8.149232 0.977812 0.970695 0.989861 4.163387 0.828848 1081.023926 55.132355 856.109253 150.748367 184.378693 16700 8.149232 0.951896 0.976898 0.996971 7.171049 0.846584 1 1 1 1 1 1 1 1 1 1 1 1 1 1048.80336 1025.891571 0.009860305 0.01088142 0.906159769 -0.042795223
15 5590 22610 658.511963 153.279419 548.930359 265.888367 188.982483 20900 13.147259 0.969364 0.984741 0.992928 2.476648 0.66044 1010.317932 67.676468 881.016113 183.160599 182.992371 17300 13.147259 0.9418 0.974548 0.994423 5.516022 0.849105 1 1 1 1 1 0 1 1 1 1 1 1 1 505.232544 942.641464 0.004749934 0.009998403 0.475069278 -0.323243054
16 5820 22620 3037.982178 167.514709 2703.330078 231.450287 189.655014 22300 12.67259 0.962485 0.936646 0.993279 13.125852 0.836991 2667.470703 38.14706 2092.871826 123.114349 173.161194 18700 12.67259 0.919427 0.947044 0.995674 21.666611 0.86698 1 1 1 1 1 1 1 1 1 1 1 1 1 2870.467469 2629.323643 0.026986645 0.027888692 0.967655459 -0.014279249
17 6060 22620 3414.365479 148.558823 3582.138672 248.002609 191.658463 24900 16.341206 0.971407 0.908646 0.993416 13.767458 0.833348 2964.529785 38.279411 2426.346924 105.450684 183.860046 18500 16.341206 0.942197 0.935989 0.996864 28.11295 0.847527 1 1 1 1 1 1 1 1 1 1 1 1 1 3265.806656 2926.250374 0.030703419 0.031038132 0.989216054 -0.004708844
18 6300 22610 495.989014 214.294113 399.320831 320.749695 187.799744 18200 18.146372 0.960117 0.988037 0.992378 1.546343 0.412358 1117.655029 62.838234 832.574768 166.810349 178.768906 17100 18.146372 0.929129 0.975258 0.995003 6.700154 0.856784 1 1 1 1 1 0 1 1 1 1 1 1 1 281.694901 1054.816795 0.002648349 0.011188224 0.236708644 -0.625785882
19 6530 22620 1012.354004 126.308823 934.984741 248.271591 190.492355 22600 16.341206 0.970991 0.973877 0.992378 4.077607 0.835462 1061.754517 44.5 897.644043 131.101135 178.41243 16700 16.341206 0.944329 0.975861 0.996307 8.098744 0.857432 1 1 1 1 1 1 1 1 1 1 1 1 1 886.045181 1017.254517 0.008330137 0.010789808 0.772037524 -0.112361591
20 2310 22840 1151.281616 97.764709 1196.791626 173.492401 191.49231 24500 23.741083 0.969852 0.964783 0.995773 6.63592 0.83365 1203.245361 34.941177 1067.609497 134.050552 183.339935 16300 23.741083 0.949318 0.96991 0.996536 8.976057 0.848473 1 1 1 1 1 1 1 1 1 1 1 1 1 1053.516907 1168.304184 0.009904619 0.012391961 0.799277791 -0.097302254

Total number of rows: 5776

Table truncated, full table size 1937 Kbytes.




Supplementary data files not provided

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