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Sample GSM16877 Query DataSets for GSM16877
Status Public on May 10, 2004
Title GC2_SARA27_LT2_4D406_1
Sample type genomic
 
Channel 1
Source name SARA27 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Saintpaul; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Saintpaul; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description genomic comparison SARA27/LT2
User - PCheng
Date_of_Scan = Wed Jan 21 13:29:56 2004
 
Submission date Feb 13, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL548
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2210 3850 1403.742554 242.867645 1147.848022 374.3255 186.779999 20200 8.684191 0.969499 0.968964 0.989166 3.750059 0.826089 381.034485 79.823532 288.173126 189.161545 177.159134 11600 8.684191 0.922366 0.991592 0.99453 2.014334 0.537156 1 1 1 1 1 1 1 1 1 1 1 0 1 1160.874909 301.210953 0.017455421 0.003218681 5.423159742 0.734252397
2 2440 3860 2789.372559 214.676468 3405.27417 310.290344 191.990341 25500 5.156736 0.977111 0.893227 0.991753 8.989556 0.832745 3124.362793 45 2754.125 107.360321 178.41243 19300 5.156736 0.940831 0.921799 0.997108 29.101653 0.857432 1 1 1 1 1 1 1 1 1 1 1 1 1 2574.696091 3079.362793 0.038714253 0.032905465 1.176529574 0.070602848
3 2670 3860 2564.054443 211.308823 2239.785645 319.114258 188.982483 22000 5.674706 0.963342 0.941429 0.992203 8.03491 0.838214 4126.859375 22.338236 3398.945068 75.292984 176.799423 19200 5.674706 0.932308 0.915504 0.997864 54.810676 0.860365 1 1 1 1 1 1 1 1 1 1 1 1 1 2352.74562 4104.521139 0.035376909 0.043860106 0.806585127 -0.09334979
4 2900 3870 683.973328 152.926468 635.668579 242.328033 193.805511 22500 16.833866 0.975523 0.98349 0.993744 2.82251 0.752669 4540.312988 54.25 3664.871338 136.242798 181.068848 21400 16.833866 0.929015 0.911713 0.995872 33.32516 0.852602 1 1 1 1 1 0 1 1 1 1 1 1 1 531.04686 4486.062988 0.007985052 0.047937187 0.166573231 -0.778394789
5 3140 3860 1152.984741 244.955887 890.233215 306.266022 189.822784 19700 5.674706 0.962238 0.972923 0.991196 3.764651 0.826529 1220.215088 35.382355 1096.240967 162.822037 176.258484 17200 5.674706 0.93149 0.967934 0.994514 7.494164 0.861348 1 1 1 1 1 1 1 1 1 1 1 1 1 908.028854 1184.832733 0.013653518 0.01266089 1.078401139 0.032780338
6 3380 3860 2657.510498 203.735291 2451.277344 303.585571 191.326019 23700 5.156736 0.970925 0.941116 0.992203 8.753744 0.833953 4388.216309 7.573529 3605.358887 40.692261 184.551254 19900 5.156736 0.958586 0.911156 0.999229 107.839089 0.84627 1 1 1 1 1 1 1 1 1 1 1 1 1 2453.775207 4380.64278 0.036896034 0.046810688 0.788196799 -0.103365333
7 3620 3860 2462.760742 292.647064 1997.424438 340.624481 187.630173 18800 8.425056 0.958858 0.945488 0.991844 7.230134 0.840672 3686.119141 47.85294 3579.984619 176.510223 185.583237 19300 8.425056 0.963143 0.903694 0.993378 20.883318 0.844394 1 1 1 1 1 1 1 1 1 1 1 1 1 2170.113678 3638.266201 0.032630776 0.038877797 0.839316469 -0.076074255
8 3850 3860 2711.923096 219.191177 2804.097168 331.571228 187.290573 22100 5.156736 0.952181 0.93309 0.991196 8.179006 0.84129 3707.995117 35.014706 3595.77832 92.336906 181.244553 20100 5.156736 0.949291 0.907005 0.997566 40.157238 0.852283 1 1 1 1 1 1 1 1 1 1 1 1 1 2492.731919 3672.980411 0.037481804 0.039248747 0.954980921 -0.020005305
9 4080 3850 1193.990234 230.308823 1951.982666 374.883087 190.492355 20600 6.052758 0.963751 0.920204 0.991173 3.184967 0.807135 1558.587891 42.058823 2553.297852 125.426781 185.239883 16500 6.052758 0.946617 0.923622 0.995293 12.426277 0.845018 1 1 1 1 1 1 1 1 1 1 1 1 1 963.681411 1516.529068 0.014490334 0.016205332 0.894170783 -0.048579525
10 4310 3860 5680.958984 221.161758 4492.101074 288.746582 187.969162 19500 9.370839 0.962553 0.89222 0.990578 19.67455 0.840056 8670.029297 73.691177 7169.14209 171.421295 178.41243 20500 9.370839 0.942937 0.838448 0.995911 50.577318 0.857432 1 1 1 1 1 1 1 1 1 1 1 1 1 5459.797226 8596.33812 0.082095892 0.091858779 0.893718518 -0.048799243
11 4550 3850 4178.866699 218.985291 3746.084717 296.525726 189.150833 22500 6.052758 0.968 0.917587 0.993294 14.092763 0.837908 7232.162598 63.39706 5696.348633 172.771973 181.77066 19700 6.052758 0.951148 0.872765 0.994774 41.859582 0.851326 1 1 1 1 1 1 1 1 1 1 1 1 1 3959.881408 7168.765538 0.059542504 0.076604019 0.777276497 -0.109424464
12 4790 3850 4526.390625 287.411774 2781.770996 319.019135 172.239624 16900 5.570056 0.947605 0.930557 0.991249 14.188461 0.868655 5619.975098 85.014709 4628.743652 166.091278 181.945694 20200 5.570056 0.933928 0.893883 0.995239 33.836666 0.851008 1 1 1 1 1 1 1 1 1 1 1 1 1 4238.978851 5534.960389 0.063739135 0.059145499 1.077666705 0.032484465
13 5020 3850 3811.553467 243.147064 2937.643066 326.722443 186.950348 20600 6.052758 0.953008 0.931046 0.991264 11.666029 0.841908 5876.109863 41.39706 4672.257324 114.257515 181.595459 20000 6.052758 0.947333 0.892265 0.996994 51.428651 0.851645 1 1 1 1 1 1 1 1 1 1 1 1 1 3568.406403 5834.712803 0.053656115 0.062348594 0.860582596 -0.065207441
14 5260 3850 1881.50769 379.088226 1443.584473 801.386414 188.307541 19500 5.570056 0.968525 0.964417 0.99054 2.347816 0.626084 2030.989746 24.294117 1770.185303 68.396355 183.339935 19600 5.570056 0.9612 0.940506 0.998207 29.694415 0.848473 1 1 1 1 1 0 1 1 1 1 1 1 1 1502.419464 2006.695629 0.022591034 0.021443155 1.053531267 0.022647429
15 5500 3850 1297.640503 281.661774 840.519592 322.315399 179.656982 15300 8.684191 0.943782 0.975563 0.99086 4.025996 0.834052 2094.23584 57.058823 2150.416016 108.653206 186.097076 21200 8.684191 0.956071 0.935646 0.997437 19.274497 0.84346 1 1 1 1 1 1 1 1 1 1 1 1 1 1015.978729 2037.177017 0.015276699 0.021768873 0.701768031 -0.15380642
16 5720 3850 4154.700684 283.602936 3097.033936 343.119934 178.946869 19700 9.60449 0.942267 0.92263 0.991119 12.108596 0.85646 6631.865234 52.014706 5692.024414 117.711197 190.492355 20800 9.60449 0.965502 0.877449 0.996559 56.340139 0.835468 1 1 1 1 1 1 1 1 1 1 1 1 1 3871.097748 6579.850528 0.058207514 0.070310989 0.827857986 -0.082044158
17 5960 3850 3351.101318 254.058823 2963.622314 290.53717 187.460449 21700 6.052758 0.961726 0.918945 0.99099 11.534157 0.840981 5499.116211 46.882355 4512.418945 101.741333 173.711777 18900 6.052758 0.93448 0.882782 0.997108 54.049972 0.865979 1 1 1 1 1 1 1 1 1 1 1 1 1 3097.042495 5452.233856 0.046568482 0.058261499 0.799301121 -0.097289578
18 6200 3850 828.706604 201.852936 511.759033 252.739929 186.438858 16700 5.570056 0.957913 0.985779 0.99276 3.278891 0.810566 2181.120361 69.235291 1810.602295 188.151901 187.290573 19100 5.570056 0.959331 0.950165 0.994431 11.592338 0.84129 1 1 1 1 1 1 1 1 1 1 1 1 1 626.853668 2111.88507 0.009425645 0.022567189 0.417670329 -0.379166376
19 6430 3850 1297.643799 194.808823 960.466492 258.5336 189.487106 21900 6.052758 0.969245 0.969658 0.993919 5.019246 0.837296 1671.642822 69.205879 1388.692749 212.350845 181.244553 18200 6.052758 0.948084 0.960655 0.992027 7.87208 0.852283 1 1 1 1 1 1 1 1 1 1 1 1 1 1102.834976 1602.436943 0.016582708 0.017123326 0.96842795 -0.013932685
20 2210 4090 1093.530029 235.176468 843.375671 333.42395 190.492355 20000 6.942505 0.965544 0.976288 0.99144 3.279698 0.810595 1455.817627 108.808823 1272.940918 245.003708 185.583237 18100 6.942505 0.956444 0.964851 0.994118 5.942023 0.844394 1 1 1 1 1 1 1 1 1 1 1 1 1 858.353561 1347.008804 0.012906578 0.014393871 0.8966718 -0.047366488

Total number of rows: 5776

Table truncated, full table size 1928 Kbytes.




Supplementary data files not provided
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