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Sample GSM16878 Query DataSets for GSM16878
Status Public on May 10, 2004
Title GC2_SARA27_LT2_4D406_2
Sample type genomic
 
Channel 1
Source name SARA27 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Saintpaul; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Saintpaul; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description genomic comparison SARA27/LT2
User - PCheng
Date_of_Scan = Wed Jan 21 13:29:56 2004
 
Submission date Feb 13, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL548
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2220 22610 1220.160645 191.544113 956.034851 261.489685 185.067963 19300 16.02692 0.966563 0.972336 0.992744 4.66619 0.845331 266.313721 26.07353 227.954056 76.251022 183.860046 10200 16.02692 0.967787 0.993431 0.997612 3.492592 0.817937 1 1 1 1 1 1 1 1 1 1 1 1 1 1028.616532 240.240191 0.016448728 0.002314185 7.107784121 0.851734229
2 2460 22610 3203.18457 248.485291 3002.028076 285.315887 182.818344 19500 19.573189 0.945988 0.906265 0.993378 11.226801 0.849421 2816.544434 43.808823 2767.799072 143.977844 183.513474 19100 19.573189 0.934802 0.926224 0.995712 19.562346 0.848157 1 1 1 1 1 1 1 1 1 1 1 1 1 2954.699279 2772.735611 0.047248943 0.0267092 1.769013794 0.247731219
3 2680 22610 1770.128418 131.485291 1682.968506 224.430862 190.157852 21800 12.424455 0.969948 0.955307 0.992859 7.887188 0.836077 2851.23291 46.617645 2457.505371 143.67334 182.992371 18900 12.424455 0.947116 0.938591 0.996948 19.845247 0.849105 1 1 1 1 1 1 1 1 1 1 1 1 1 1638.643127 2804.615265 0.026203735 0.02701629 0.969923497 -0.013262519
4 2920 22610 551.451111 200.941177 526.971069 290.220764 189.150833 18400 13.439294 0.9637 0.98452 0.991264 1.900109 0.506696 3517.477295 44.338234 3424.271973 107.882828 179.834061 19900 13.439294 0.944955 0.884903 0.997047 32.604608 0.854847 1 1 1 1 1 0 1 1 1 1 1 1 1 350.509934 3473.139061 0.005605045 0.033456044 0.167534615 -0.775895448
5 3150 22610 760.572083 152 671.902161 291.265472 186.779999 22200 12.424455 0.958436 0.981323 0.990677 2.611268 0.696338 1190.819336 18.75 1061.020996 66.153008 178.055252 16600 12.424455 0.950436 0.967651 0.997643 18.000986 0.858081 1 1 1 1 1 0 1 1 1 1 1 1 1 608.572083 1172.069336 0.009731748 0.011290306 0.861956036 -0.064514885
6 3390 22600 2003.600952 171.382355 1660.162964 235.614471 186.097076 21300 5.669044 0.952859 0.961288 0.993889 8.503726 0.84346 3339.618164 80.735291 2673.834473 151.852112 181.945694 18600 5.669044 0.947438 0.935074 0.995895 21.99257 0.851008 1 1 1 1 1 1 1 1 1 1 1 1 1 1832.218597 3258.882873 0.029299223 0.031392158 0.933329361 -0.029965072
7 3620 22610 1352.234253 131.970581 1397.643799 315.819519 192.817535 22200 12.424455 0.969586 0.958183 0.991211 4.281668 0.831241 2506.912109 50.89706 2167.57666 144.462784 183.339935 18200 12.424455 0.944494 0.943268 0.996475 17.353342 0.848473 1 1 1 1 1 1 1 1 1 1 1 1 1 1220.263672 2456.015049 0.01951338 0.023658295 0.824800759 -0.083650948
8 3870 22610 1942.312256 196.911758 2171.603027 259.320221 189.150833 22100 19.573189 0.973978 0.955841 0.994156 7.490015 0.837908 3294.947998 109.5 3776.537109 407.393127 176.619293 19200 19.573189 0.947676 0.91114 0.99379 8.087883 0.860692 1 1 1 1 1 1 1 1 1 1 1 1 1 1745.400498 3185.447998 0.027910904 0.030684775 0.909601084 -0.041149031
9 4090 22600 1018.251404 172.955887 2220.30957 218.405441 187.969162 17500 2.427037 0.96439 0.983665 0.994682 4.662207 0.840056 1393.879761 55 2529.47583 145.810959 179.656982 15800 2.427037 0.953474 0.9254 0.995438 9.559499 0.855169 1 1 1 1 1 1 1 1 1 1 1 1 1 845.295517 1338.879761 0.01351722 0.012897157 1.048077463 0.020393382
10 4330 22600 3415.2146 153.558823 3064.096924 255.452438 191.159576 21900 5.669044 0.966393 0.926781 0.9925 13.369278 0.834255 6046.785156 55.882355 4744.789063 160.940201 170.568253 18600 5.669044 0.949424 0.886368 0.99424 37.571627 0.871694 1 1 1 1 1 1 1 1 1 1 1 1 1 3261.655777 5990.902801 0.05215752 0.057709152 0.903799809 -0.043927755
11 4560 22600 2335.377686 107.735291 2249.216064 206.124634 190.157852 23300 2.427037 0.968314 0.944122 0.994263 11.32993 0.836077 4729.378906 82.779411 3672.675781 294.641754 185.067963 18200 2.427037 0.945245 0.908752 0.995216 16.051285 0.845331 1 1 1 1 1 1 1 1 1 1 1 1 1 2227.642395 4646.599495 0.035622491 0.044759751 0.795859907 -0.099163373
12 4800 22600 2309.156738 104.25 2204.256104 192.958145 186.779999 21700 5.669044 0.958396 0.941307 0.993874 11.967138 0.842218 3780.66333 46.382355 3158.073975 131.294586 181.068848 19300 5.669044 0.960093 0.920303 0.995438 28.795272 0.852602 1 1 1 1 1 1 1 1 1 1 1 1 1 2204.906738 3734.280975 0.035258922 0.035971571 0.980188552 -0.008690374
13 5030 22600 2496.953857 149.264709 2412.379395 246.748138 189.487106 23800 2.427037 0.966643 0.941414 0.992882 10.119444 0.837296 4557.229492 29.367647 3454.886719 96.040092 181.068848 18300 2.427037 0.943246 0.919388 0.997215 47.451323 0.852602 1 1 1 1 1 1 1 1 1 1 1 1 1 2347.689148 4527.861845 0.037542173 0.043615975 0.860743633 -0.065126181
14 5270 22600 1159.765259 131.367645 1131.346069 203.338837 190.659378 21300 5.669044 0.969234 0.970726 0.994408 5.703609 0.835165 1606.078735 37.308823 1345.285767 142.252899 176.799423 16500 5.669044 0.935996 0.959908 0.995346 11.290306 0.860365 1 1 1 1 1 1 1 1 1 1 1 1 1 1028.397614 1568.769912 0.016445227 0.015111642 1.088248814 0.036728202
15 5510 22600 664.103088 119.117645 615.628357 178.769058 187.460449 19400 10.410842 0.964865 0.980629 0.995071 3.714866 0.825018 1700.49707 55.926472 1655.610962 145.635132 184.895889 17300 10.410842 0.960563 0.962059 0.995934 11.676421 0.845644 1 1 1 1 1 1 1 1 1 1 1 1 1 544.985443 1644.570598 0.008714926 0.015841815 0.550121697 -0.259541226
16 5740 22600 1849.090576 170.264709 1731.361816 315.296417 190.32518 23200 5.669044 0.960802 0.955208 0.99015 5.86461 0.835772 3821.382568 31.838236 2934.425293 84.642288 180.54068 18300 5.669044 0.935503 0.929756 0.997597 45.147439 0.853562 1 1 1 1 1 1 1 1 1 1 1 1 1 1678.825867 3789.544332 0.026846301 0.036503912 0.735436285 -0.133454947
17 5970 22600 2377.867188 204.529419 2407.046387 334.433594 189.990387 22600 2.427037 0.969046 0.933846 0.989494 7.110133 0.836381 4009.092773 73.632355 3284.242676 162.078568 182.12056 19400 2.427037 0.959676 0.915611 0.995193 24.73549 0.85069 1 1 1 1 1 1 1 1 1 1 1 1 1 2173.337769 3935.460418 0.034754099 0.037909492 0.9167651 -0.037741928
18 6210 22600 471.036133 161.970581 332.965302 204.219223 185.925949 16600 5.669044 0.959001 0.989777 0.995277 2.306522 0.615073 1563.01709 85.632355 1222.852173 466.644226 182.64415 17600 5.669044 0.95184 0.964935 0.99675 3.349483 0.813066 1 1 1 1 1 0 1 1 1 1 1 1 1 309.065552 1477.384735 0.004942304 0.014231348 0.347282891 -0.459316612
19 6440 22590 675.737305 140.382355 668.586121 250.861862 191.159576 21700 7.577199 0.969982 0.981689 0.991928 2.693663 0.71831 996.110474 47.588234 1036.75354 130.609283 182.12056 17200 7.577199 0.94108 0.971008 0.99588 7.626644 0.85069 1 1 1 1 1 0 1 1 1 1 1 1 1 535.35495 948.52224 0.008560924 0.009136922 0.936959238 -0.028279302
20 2220 22840 882.15564 167.25 791.930908 305.550751 192.982544 21200 12.554836 0.97476 0.980263 0.993317 2.8871 0.769893 1336.730347 38.735294 1151.332397 97.132103 181.244553 17800 12.554836 0.952241 0.969986 0.997398 13.761983 0.852283 1 1 1 1 1 0 1 1 1 1 1 1 1 714.90564 1297.995053 0.01143214 0.012503323 0.914328126 -0.038897921

Total number of rows: 5776

Table truncated, full table size 1929 Kbytes.




Supplementary data files not provided

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