NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM16879 Query DataSets for GSM16879
Status Public on May 10, 2004
Title GC2_SARA27_LT2_4D406_3
Sample type genomic
 
Channel 1
Source name SARA27 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Saintpaul; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
Channel 2
Source name LT2 gDNA overnight in LB
Organisms Salmonella enterica subsp. enterica serovar Saintpaul; Salmonella enterica subsp. enterica serovar Typhimurium
Extracted molecule genomic DNA
 
 
Description genomic comparison SARA27/LT2
User - PCheng
Date_of_Scan = Wed Jan 21 13:29:56 2004
 
Submission date Feb 13, 2004
Last update date May 28, 2005
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-336-9554
Organization name University of California, Irvine
Department Microbiology & Molecular Genetics
Street address 132 Med Surge I
City Irvine
State/province CA
ZIP/Postal code 92697
Country USA
 
Platform ID GPL548
Series (1)
GSE1035 Genomic comparisons of Salmonella enterica sspI strains

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2210 41340 887.097961 224.294113 603.195129 312.501709 190.157852 19400 17.974976 0.965274 0.982155 0.992157 2.838698 0.756986 326.689178 105.117645 282.406311 183.902603 191.159576 14800 17.974976 0.970327 0.992264 0.995338 1.776425 0.473713 1 1 1 1 1 0 1 1 1 1 1 0 1 662.803848 221.571533 0.007654725 0.002126452 3.599763272 0.556273942
2 2440 41340 2946 277.132355 2966.208496 317.326324 186.438858 18800 14.202142 0.958019 0.894363 0.992531 9.283818 0.842838 2021.625 89.691177 1952.547607 226.504532 187.120529 21600 14.202142 0.960504 0.946724 0.99456 8.925318 0.841599 1 1 1 1 1 1 1 1 1 1 1 1 1 2668.867645 1931.933823 0.030822767 0.018541034 1.662408205 0.220737674
3 2670 41340 1625.529785 294.264709 1104.187378 365.542755 181.77066 16800 11.414986 0.931166 0.965218 0.990494 4.446894 0.844887 1813.348389 86.691177 1791.928589 192.034149 191.326019 22100 11.414986 0.968078 0.951172 0.99324 9.442843 0.833953 1 1 1 1 1 1 1 1 1 1 1 1 1 1331.265076 1726.657212 0.015374788 0.016570966 0.927814798 -0.032538705
4 2910 41340 640.555542 177.794113 525.084473 265.990143 191.326019 19800 14.202142 0.974713 0.986031 0.992096 2.408193 0.642185 2767.369629 129.191177 2607.658691 216.344406 190.157852 23000 14.202142 0.964991 0.932678 0.993042 12.791501 0.836077 1 1 1 1 1 0 1 1 1 1 1 1 1 462.761429 2638.178452 0.005344434 0.02531896 0.211084268 -0.675544132
5 3140 41340 903.69812 241.941177 768.323181 323.106049 191.990341 21200 11.414986 0.970649 0.977425 0.990959 2.796909 0.745842 974.751282 111.205879 1016.418701 209.722885 188.138428 19700 11.414986 0.953364 0.970856 0.993729 4.647806 0.839748 1 1 1 1 1 0 1 1 1 1 1 1 1 661.756943 863.545403 0.007642635 0.008287564 0.922181091 -0.035183787
6 3370 41340 2563.57666 263.176483 1915.651123 305.651917 183.513474 18900 10.435658 0.966211 0.948364 0.991898 8.387242 0.848157 3241.635986 110.470589 2857.184326 262.383698 186.438858 20600 10.435658 0.965435 0.9319 0.993347 12.354563 0.842838 1 1 1 1 1 1 1 1 1 1 1 1 1 2300.400177 3131.165397 0.026567334 0.030050224 0.884097712 -0.053499734
7 3610 41340 1616.854736 213.191177 1759.75061 303.365967 193.805511 24100 11.414986 0.977156 0.950821 0.992729 5.329717 0.829445 2603.069336 113.852943 2730.969971 220.441635 185.411636 21600 11.414986 0.964028 0.925713 0.993355 11.808429 0.844706 1 1 1 1 1 1 1 1 1 1 1 1 1 1403.663559 2489.216393 0.016210918 0.023889351 0.678583438 -0.168396744
8 3850 41340 2232.361572 263.588226 2185.557373 320.781342 184.723648 17700 14.202142 0.95324 0.945 0.992073 6.959138 0.845957 2418.70874 97.073532 2834.198242 183.899979 186.779999 20600 14.202142 0.96448 0.94149 0.995026 13.152306 0.842218 1 1 1 1 1 1 1 1 1 1 1 1 1 1968.773346 2321.635208 0.022737374 0.022281052 1.020480294 0.008804623
9 4080 41340 1506.651733 221.514709 1700.343262 263.048279 186.097076 17800 11.414986 0.957075 0.935104 0.993942 5.727662 0.84346 1465.656738 106.808823 1557.664795 223.527634 188.138428 20100 11.414986 0.969159 0.950912 0.993355 6.556938 0.839748 1 1 1 1 1 1 1 1 1 1 1 1 1 1285.137024 1358.847915 0.014842054 0.01304105 1.138102733 0.056181466
10 4320 41330 4069.180176 211.882355 3302.144287 268.535645 187.120529 21100 9.649453 0.961879 0.930206 0.993103 15.153222 0.841599 5422.770996 132.985291 5375.915527 226.870438 192.156067 24000 9.649453 0.972657 0.886787 0.993919 23.902502 0.832444 1 1 1 1 1 1 1 1 1 1 1 1 1 3857.297821 5289.785705 0.044547953 0.050766799 0.87750172 -0.056752024
11 4550 41330 3460.593506 204.573532 2535.170166 261.093933 183.339935 18700 4.659724 0.941696 0.933647 0.99321 13.254209 0.848473 5127.354004 155.264709 4597.012207 279.9086 183.166229 21200 4.659724 0.958946 0.896477 0.992622 18.317958 0.848789 1 1 1 1 1 1 1 1 1 1 1 1 1 3256.019974 4972.089295 0.037603792 0.047717823 0.788045011 -0.103448976
12 4780 41330 3055.396973 232.411758 2593.992432 352.279785 186.097076 20400 0.560445 0.953281 0.932037 0.989212 8.673211 0.84346 3889.294678 119.235291 3696.093994 228.035034 189.150833 22400 0.560445 0.966612 0.916176 0.992622 17.055689 0.837908 1 1 1 1 1 1 1 1 1 1 1 1 1 2822.985215 3770.059387 0.032602672 0.036181777 0.901079885 -0.045236705
13 5020 41330 2763.089355 189.014709 2634.682861 291.497955 189.822784 23500 4.659724 0.972893 0.93428 0.992546 9.478932 0.836686 3963.602783 74.235291 3725.343018 142.104874 188.813965 22400 4.659724 0.963483 0.911858 0.995438 27.892096 0.83852 1 1 1 1 1 1 1 1 1 1 1 1 1 2574.074646 3889.367492 0.029728002 0.037326793 0.796425286 -0.09885496
14 5250 41330 909.344666 122.544121 941.724243 171.497833 192.817535 23500 0.560445 0.972415 0.974892 0.995461 5.302368 0.831241 1078.912354 108.867645 1181.863037 185.960342 186.609512 19400 0.560445 0.953808 0.970955 0.994659 5.801841 0.842528 1 1 1 1 1 1 1 1 1 1 1 1 1 786.800545 970.044709 0.009086764 0.009309652 0.976058356 -0.010524216
15 5480 41330 725.342834 171.632355 617.885437 254.100632 190.659378 21000 5.377283 0.967266 0.982742 0.993187 2.85455 0.761213 1609.81958 67.632355 1731.620972 142.182236 185.583237 19400 5.377283 0.955637 0.958786 0.996384 11.322227 0.844394 1 1 1 1 1 0 1 1 1 1 1 1 1 553.710479 1542.187225 0.006394805 0.014800582 0.43206444 -0.364451476
16 5720 41330 1818.212402 140.323532 1656.163208 257.615448 191.990341 22600 0.560445 0.968089 0.958954 0.992477 7.057855 0.832745 3165.915527 94.308823 2711.726074 195.215942 181.42009 20100 0.560445 0.957374 0.933792 0.994347 16.217505 0.851963 1 1 1 1 1 1 1 1 1 1 1 1 1 1677.88887 3071.606704 0.019377948 0.029478631 0.657355755 -0.182199531
17 5950 41330 2247.340088 220.205887 2506.544678 313.619904 192.156067 24700 5.377283 0.967398 0.925087 0.992096 7.165808 0.832444 3748.459961 61.89706 3791.364258 130.797913 185.239883 20000 5.377283 0.948484 0.898216 0.996948 28.658408 0.845018 1 1 1 1 1 1 1 1 1 1 1 1 1 2027.134201 3686.562901 0.023411384 0.03538045 0.661703963 -0.179336264
18 6190 41330 531.391541 176.014709 441.789368 251.300232 188.307541 16600 0.560445 0.967964 0.985435 0.992867 2.114568 0.563885 1380.726807 88.235291 1224.17627 167.484924 187.799744 19400 0.560445 0.959163 0.965057 0.99543 8.243887 0.840364 1 1 1 1 1 0 1 1 1 1 1 1 1 355.376832 1292.491516 0.004104249 0.012404218 0.330875258 -0.480335707
19 6430 41330 929.802734 248.529419 504.552765 303.165009 178.946869 14700 4.659724 0.951834 0.98526 0.991928 3.066986 0.802644 1006.505127 113.882355 963.443237 293.614655 184.033096 19400 4.659724 0.950211 0.970314 0.99305 3.42798 0.815769 1 1 1 1 1 1 1 1 1 1 1 1 1 681.273315 892.622772 0.007868029 0.008566623 0.918451651 -0.036943701
20 2200 41570 1061.61792 234.632355 685.868225 302.325562 188.138428 17800 7.141951 0.962557 0.978966 0.991348 3.511506 0.818561 1146.43335 139.911758 1138.462646 216.389755 186.609512 18000 7.141951 0.956978 0.967461 0.993889 5.298002 0.842528 1 1 1 1 1 1 1 1 1 1 1 1 1 826.985565 1006.521592 0.009550861 0.009659726 0.98873001 -0.004922284

Total number of rows: 5776

Table truncated, full table size 1936 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap