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Sample GSM1688 Query DataSets for GSM1688
Status Public on Jun 27, 2002
Title 110 Antigens, mix #4, 12-9-99
Sample type protein
 
Channel 1
Source name Reference antigens
Organism Homo sapiens
Extracted molecule protein
 
Channel 2
Source name Test antigens
Organism Homo sapiens
Extracted molecule protein
 
 
Description Category: Protein array
Subcategory: Antibody
Scanning Software: ScanAlyze
Software version: 2.44
Lot batch = 8cl113
 
Submission date May 23, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL173
Series (2)
GSE43 Antibody Arrays Figure 1
GSE50 Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 85 83 31 32 32 72 70 .081 0 .4 6 7 0 .035 865 349 269 290 261 282
2 85 84 2 32 32 32 72 72 .079 0 .5 6 7 0 .032 674 349 268 289 296 317
3 77 76 31 1 31 30 68 2 70 0 .667 6 14 0 652 349 268 289 331 352
4 77 75 2 32 32 32 72 72 .056 0 .488 9 9 0 .023 643 349 268 289 366 387
5 91 72 1 31 34 33 75 70 .197 0 .522 7 6 .016 684 349 268 289 401 422
6 74 74 3 33 33 33 75 75 0 .429 9 8 0 657 349 267 288 436 457
7 76 75 33 1 32 32 72 3 75 .015 0 .5 7 12 0 .007 671 349 267 288 472 493
8 71 71 2 32 1 32 31 70 2 72 .015 0 0 .417 11 12 2 1 .5 1 .007 673 349 267 288 507 528 0
9 70 68 8 34 3 32 31 70 7 77 .001 0 -.193 .462 12 14 2.667 1.143 .375 .875 0 655 349 267 288 542 563 -.193
10 68 67 4 31 32 31 70 70 0 .429 9 10 0 639 349 267 288 577 598
11 69 68 3 33 2 31 31 70 5 75 .073 0 .737 .539 10 10 1.5 .6 .667 1.667 .054 620 349 266 287 612 633 .737
12 68 68 4 31 1 30 30 68 2 70 .052 0 -1 .455 11 12 4 2 .25 .5 .024 632 349 266 287 647 668 -1
13 78 76 3 30 31 31 70 68 .029 0 .385 10 8 .013 868 349 304 325 261 282
14 78 75 32 1 32 31 70 2 72 .1 0 .543 7 12 0 .046 656 349 303 324 296 317
15 73 71 2 30 31 30 68 68 0 .333 9 9 0 658 349 303 324 331 352
16 73 71 3 31 31 31 70 70 0 .389 10 9 0 659 349 303 324 366 387
17 73 70 3 32 1 32 31 70 2 72 0 -.585 .6 12 14 3 1.5 .333 .667 660 349 303 324 401 422 -.585
18 71 70 154 32 33 32 72 72 0 .5 12 9 0 677 349 303 324 437 458
19 73 71 23 32 1 32 31 70 2 72 .024 0 -3.524 .353 30 13 23 11.5 .043 .087 .01 638 349 302 323 472 493 -3.524
20 71 71 25 31 32 31 70 70 0 .25 33 10 0 622 349 302 323 507 528

Total number of rows: 2304

Table truncated, full table size 229 Kbytes.




Supplementary data files not provided
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