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Sample GSM1692 Query DataSets for GSM1692
Status Public on Jun 27, 2002
Title Antigen array, 10X serum
Sample type protein
 
Channel 1
Source name Reference antibodies
Organism Homo sapiens
Extracted molecule protein
 
Channel 2
Source name Test antibodies, mix #2
Organism Homo sapiens
Extracted molecule protein
 
 
Description Category: Protein array
Subcategory: Antigen
Scanning Software: GenePix
Software version: 2.0.1.16
Lot batch = 14cl43
 
Submission date May 23, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL172
Series (2)
GSE45 Antibody Arrays Figures 2, 4 and 6
GSE50 Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 57 55 192 1498 1419 87 79 79 1419 1498 .883 0 2.886 7.507 10 10 .135 .135 7.391 7.391 6.701 420 52 145 154 167 176 2.886
2 51 48 15 111 45 71 66 66 45 111 .407 -100 1.8 19 43 .333 .333 3 3 .418 1272 156 143 158 202 217 1.585
3 59 56 439 5107 5019 98 88 88 5019 5107 .828 0 3.515 10.148 71 87 .087 .087 11.433 11.433 9.64 820 120 145 157 241 253 3.515
4 63 61 198 764 669 99 95 95 669 764 .866 0 1.757 3.184 94 10 .296 .296 3.379 3.379 2.708 420 52 147 156 281 290 1.757
5 62 61 1044 2295 2197 101 98 98 2197 2295 .152 0 1.073 25.925 92 10 .475 .475 2.104 2.104 .052 340 52 148 156 319 327 1.073
6 61 61 14 118 18 107 100 100 18 118 .122 -100 1.583 41 19 .778 .778 1.286 1.286 .27 1272 156 145 160 351 366 .363
7 62 56 58 284 191 102 93 93 191 284 .219 0 1.719 3.338 53 10 .304 .304 3.293 3.293 .289 340 52 150 158 393 401 1.719
8 65 60 19 163 72 106 91 91 72 163 .355 -100 3.171 26 41 .264 .264 3.789 3.789 .878 1272 156 146 161 426 441 1.922
9 59 58 119 2931 2851 88 80 80 2851 2931 .783 0 4.582 22.903 98 10 .042 .042 23.958 23.958 16.905 420 52 150 159 466 475 4.582
10 61 60 36 2001 1925 77 76 76 1925 2001 .563 0 5.741 51.273 78 10 .019 .019 53.472 53.472 20.04 340 52 152 160 506 514 5.741
11 59 57 14 162 82 83 80 80 82 162 .243 -100 2.579 37 55 .171 .171 5.857 5.857 1.143 1272 156 180 195 164 179 2.55
12 58 56 16 129 48 86 81 81 48 129 .341 0 1.585 2.727 47 56 .333 .333 3 3 .735 820 120 179 191 205 217 1.585
13 61 59 1657 14609 14534 79 75 75 14534 14609 .883 0 3.133 8.659 97 10 .114 .114 8.771 8.771 7.671 560 80 183 193 242 252 3.133
14 63 60 861 16969 16884 87 85 85 16884 16969 .853 0 4.293 20.411 10 10 .051 .051 19.61 19.61 15.317 420 52 184 193 280 289 4.293
15 64 62 664 2067 1978 94 89 89 1978 2067 .919 0 1.575 3.039 95 95 .336 .336 2.979 2.979 2.756 656 80 183 194 315 326 1.575
16 65 61 2036 247 138 119 109 109 138 247 .69 0 -3.883 .065 10 82 14.754 14.754 .068 .068 .057 420 52 185 194 354 363 -3.883
17 82 65 692 28081 27968 136 113 113 27968 28081 .913 0 5.337 37.573 76 10 .025 .025 40.416 40.416 36.726 656 80 185 196 390 401 5.337
18 60 59 47 176 85 95 91 91 85 176 .605 0 .855 1.658 72 73 .553 .553 1.809 1.809 1.145 656 80 185 196 427 438 .855
19 67 63 93 665 552 143 113 113 552 665 .766 0 2.569 5.564 57 65 .168 .168 5.935 5.935 4.3 820 120 186 198 464 476 2.569
20 62 62 23 161 51 118 110 110 51 161 .235 0 1.149 2.75 61 53 .451 .451 2.217 2.217 .607 420 52 187 196 503 512 1.149

Total number of rows: 1440

Table truncated, full table size 161 Kbytes.




Supplementary data files not provided

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