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Sample GSM1695

Query DataSets for GSM1695

Status

Public on Jun 27, 2002

Title

Antigen array, 100X serum-135

Sample type

protein

Channel 1

Source name

Reference antibodies

Organism

Extracted molecule

protein

Channel 2

Source name

Test antibodies, mix #4

Organism

Extracted molecule

protein

Description

Category: Protein array
Subcategory: Antigen
Scanning Software: GenePix
Software version: 2.0.1.16
Lot batch = 14cl35

Submission date

May 23, 2002

Last update date

Nov 21, 2005

Organization

Stanford Microarray Database (SMD)

E-mail(s)

array@genome.stanford.edu

Phone

650-498-6012

URL

http://genome-www5.stanford.edu/

Department

Stanford University, School of Medicine

Street address

300 Pasteur Drive

City

Stanford

State/province

CA

ZIP/Postal code

94305

Country

USA

Platform ID

Series (2)

GSE44	Antibody Arrays Figure 7
GSE50	Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN	mean channel 1 background
CH1B_MEDIAN	median channel 1 background
CH1D_MEAN	difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN	mean channel 2 signal
CH2D_MEAN	difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN	mean of channel 2 background
CH2B_MEDIAN	median of channel 2 background
CH2BN_MEDIAN	normalized CH2B_MEDIAN
CH2DN_MEAN	normalized CH2D_MEAN
CH2IN_MEAN	normalized CH2I_MEAN
CORR	simple correlation coefficient of channel 1 and channel 2 pixels
FLAG	user defined flag (default=0)
VALUE	same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD	standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD	standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN	ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN	ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN	ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN	ratio of CH2DN_MEAN and CH1DN_MEAN
REGR	slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX	total number of background pixels
TOT_SPIX	total number of signal (spot) pixels
TOP	vertical, short-axis spot ellipse minimum pixel coordinate
BOT	vertical, short-axis spot ellipse maximum pixel coordinate
LEFT	horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT	horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE	aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF	CH1B_MEAN	CH1B_MEDIAN	CH1D_MEAN	CH2I_MEAN	CH2D_MEAN	CH2B_MEAN	CH2B_MEDIAN	CH2BN_MEDIAN	CH2DN_MEAN	CH2IN_MEAN	CORR	FLAG	VALUE	PIX_RAT2_MEDIAN	PERGTBCH1I_1SD	PERGTBCH2I_1SD	RAT1_MEAN	RAT1N_MEAN	RAT2_MEAN	RAT2N_MEAN	REGR	TOT_BPIX	TOT_SPIX	TOP	BOT	LEFT	RIGHT	UNF_VALUE
1	93	91	119	509	256	255	253	79	80	159	.63	-100		1.959	78	63	.465	1.49	2.151	.671	1.994	560	80	173	183	134	144	-.575
2	93	90	45	270		283	283	88	-4	84		-100		.808	62	2						560	80	174	184	171	181
3	96	93	357	149	6	150	143	45	2	46	.08	0	-7.575	.084	100	19	59.5	190.697	.017	.005	.021	420	52	175	184	209	218	-7.575
4	98	96	62	119		139	135	42	-5	37		0		1.692	67	7						560	80	175	185	245	255
5	107	101	46	137	2	139	135	42	1	43	.07	0	-6.204	.562	36	17	23	73.715	.043	.014	.038	560	80	176	186	283	293	-6.204
6	105	103	33	110		133	131	41	-7	34		0		1.048	53	6						560	80	176	186	320	330
7	106	104	16	155	17	146	138	43	5	48	.04	0	-1.593	1.123	31	28	.941	3.016	1.063	.332	.057	1272	156	174	189	360	375	-1.593
8	108	105	55	1354	1221	132	133	41	381	422	.5	0	2.792	23.528	75	100	.045	.144	22.2	6.927	7.247	420	52	175	184	397	406	2.792
9	106	105	30	117		130	128	40	-3	37	.03	0		.897	36	6					.015	1272	156	175	190	435	450
10	107	105	15	154	18	140	136	42	6	48	.1	-100		1.321	30	28	.833	2.671	1.2	.374	.136	1272	156	176	191	473	488	-1.417
11	93	91	34	403	81	325	322	100	25	126	.24	0	-.428	1.723	46	41	.42	1.345	2.382	.743	1.429	1272	156	208	223	135	150	-.428
12	92	90	11	349	9	341	340	106	3	109	0	0	-1.97	1.451	30	12	1.222	3.917	.818	.255	.05	1272	156	209	224	173	188	-1.97
13	98	96	717	502	305	201	197	61	95	157	.58	0	-2.913	.284	100	78	2.351	7.534	.425	.133	.379	420	52	211	220	209	218	-2.913
14	99	98	296	302	110	206	192	60	34	94	.37	0	-3.108	.426	100	59	2.691	8.624	.372	.116	.172	340	52	212	220	248	256	-3.108
15	104	100	328	299	106	199	193	60	33	93	.55	0	-3.31	.293	96	61	3.094	9.917	.323	.101	.273	340	52	212	220	285	293	-3.31
16	108	104	640	691	536	163	155	48	167	216	.12	0	-1.936	1.207	85	94	1.194	3.827	.838	.261	.021	820	120	212	224	320	332	-1.936
17	100	99	692	398	262	139	136	42	82	124	.8	0	-3.082	.375	100	96	2.641	8.465	.379	.118	.324	420	52	212	221	359	368	-3.082
18	107	105	13	158	26	135	132	41	8	49	.16	0	-.68	1.595	28	39	.5	1.602	2	.624	.204	1272	156	212	227	398	413	-.68
19	115	112	156	188	37	155	151	47	12	59	.29	0	-3.756	.333	100	36	4.216	13.513	.237	.074	.165	420	52	211	220	435	444	-3.756
20	106	103	28	148	3	150	145	45	1	46	0	0	-4.903	1.302	35	14	9.333	29.913	.107	.033	.015	1272	156	213	228	472	487	-4.903

Total number of rows: 1440

Table truncated, full table size 147 Kbytes.

Supplementary data files not provided

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