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Sample GSM1699

Query DataSets for GSM1699

Status

Public on Jun 27, 2002

Title

Antigen array, 10X serum-139

Sample type

protein

Channel 1

Source name

Reference antibodies

Organism

Extracted molecule

protein

Channel 2

Source name

Test antibodies, mix #6

Organism

Extracted molecule

protein

Description

Category: Protein array
Subcategory: Antigen
Scanning Software: GenePix
Software version: 2.0.1.16
Lot batch = 14cl39

Submission date

May 23, 2002

Last update date

Nov 21, 2005

Organization

Stanford Microarray Database (SMD)

E-mail(s)

array@genome.stanford.edu

Phone

650-498-6012

URL

http://genome-www5.stanford.edu/

Department

Stanford University, School of Medicine

Street address

300 Pasteur Drive

City

Stanford

State/province

CA

ZIP/Postal code

94305

Country

USA

Platform ID

Series (2)

GSE45	Antibody Arrays Figures 2, 4 and 6
GSE50	Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN	mean channel 1 background
CH1B_MEDIAN	median channel 1 background
CH1D_MEAN	difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN	mean channel 2 signal
CH2D_MEAN	difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN	mean of channel 2 background
CH2B_MEDIAN	median of channel 2 background
CH2BN_MEDIAN	normalized CH2B_MEDIAN
CH2DN_MEAN	normalized CH2D_MEAN
CH2IN_MEAN	normalized CH2I_MEAN
CORR	simple correlation coefficient of channel 1 and channel 2 pixels
FLAG	user defined flag (default=0)
VALUE	same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD	standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD	standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN	ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN	ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN	ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN	ratio of CH2DN_MEAN and CH1DN_MEAN
REGR	slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX	total number of background pixels
TOT_SPIX	total number of signal (spot) pixels
TOP	vertical, short-axis spot ellipse minimum pixel coordinate
BOT	vertical, short-axis spot ellipse maximum pixel coordinate
LEFT	horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT	horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE	aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF	CH1B_MEAN	CH1B_MEDIAN	CH1D_MEAN	CH2I_MEAN	CH2D_MEAN	CH2B_MEAN	CH2B_MEDIAN	CH2BN_MEDIAN	CH2DN_MEAN	CH2IN_MEAN	CORR	FLAG	VALUE	PIX_RAT2_MEDIAN	PERGTBCH1I_1SD	PERGTBCH2I_1SD	RAT1_MEAN	RAT1N_MEAN	RAT2_MEAN	RAT2N_MEAN	REGR	TOT_BPIX	TOT_SPIX	TOP	BOT	LEFT	RIGHT	UNF_VALUE
1	76	73	152	682	605	85	77	80	625	705	.83	0	2.04	3.727	93	88	.251	.243	3.98	4.113	3.614	656	80	187	198	154	165	2.04
2	76	75	79	203	123	83	80	83	127	210	.63	0	.686	1.292	92	90	.642	.622	1.557	1.609	1.016	340	52	190	198	193	201	.686
3	75	72	388	2867	2787	88	80	83	2880	2963	.82	0	2.892	6.257	92	98	.139	.135	7.183	7.423	6.269	560	80	189	199	230	240	2.892
4	74	71	159	153	75	82	78	81	78	158	.68	0	-1.037	.458	100	96	2.12	2.051	.472	.487	.417	420	52	189	198	268	277	-1.037
5	76	73	74	99	28	74	71	73	29	102	.07	0	-1.355	.426	86	56	2.643	2.557	.378	.391	.007	340	52	189	197	306	314	-1.355
6	73	71	31	62	3	60	59	61	3	64	.08	0	-3.322	.481	61	18	10.333	9.999	.097	.1	.051	560	80	189	199	343	353	-3.322
7	69	68	43	144	87	59	57	59	90	149	.53	0	1.064	1.767	82	100	.494	.478	2.023	2.091	.799	420	52	190	199	382	391	1.064
8	76	74	39	61	2	62	59	61	2	63	.12	0	-4.238	.198	66	12	19.5	18.87	.051	.053	.072	560	80	189	199	418	428	-4.238
9	66	63	123	71	7	65	64	66	7	73	.23	0	-4.088	.11	100	17	17.571	17.004	.057	.059	.064	340	52	190	198	457	465	-4.088
10	66	64	32	96	14	82	82	85	14	99	.13	0	-1.145	1.235	71	40	2.286	2.212	.438	.452	.153	560	80	189	199	493	503	-1.145
11	99	74	20	111	31	83	80	83	32	115	.13	0	.68	.825	0	26	.645	.624	1.55	1.602	.4	1272	156	223	238	151	166	.68
12	75	73	13	80	2	80	78	81	2	83	.08	0	-2.653	.778	30	17	6.5	6.29	.154	.159	.085	1272	156	223	238	189	204	-2.653
13	82	77	1847	14616	14544	124	72	74	15030	15104	.86	0	3.025	7.369	100	100	.127	.123	7.874	8.137	6.811	340	52	227	235	231	239	3.025
14	75	74	696	12966	12872	97	94	97	13302	13399	.9	0	4.256	18.145	98	100	.054	.052	18.494	19.112	15.627	420	52	227	236	268	277	4.256
15	77	75	577	1757	1685	74	72	74	1741	1816	.82	0	1.593	2.643	96	98	.342	.331	2.92	3.018	2.462	560	80	226	236	306	316	1.593
16	74	71	1627	210	135	79	75	78	140	217	.65	0	-3.544	.08	100	100	12.052	11.662	.083	.086	.068	420	52	226	235	343	352	-3.544
17	71	70	1241	400	325	78	75	78	336	413	.83	0	-1.886	.247	100	100	3.818	3.695	.262	.271	.229	420	52	226	235	381	390	-1.886
18	72	71	48	78	7	72	71	73	7	81	.22	0	-2.73	.423	67	26	6.857	6.636	.146	.151	.135	560	80	226	236	418	428	-2.73
19	71	68	80	252	170	83	82	85	176	260	.45	0	1.135	2.05	78	88	.471	.455	2.125	2.196	1.31	560	80	227	237	457	467	1.135
20	67	66	30	89	5	85	84	87	5	92	.03	0	-2.538	.882	65	26	6	5.806	.167	.172	.044	560	80	227	237	493	503	-2.538

Total number of rows: 1440

Table truncated, full table size 156 Kbytes.

Supplementary data files not provided

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