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Sample GSM1699 Query DataSets for GSM1699
Status Public on Jun 27, 2002
Title Antigen array, 10X serum-139
Sample type protein
 
Channel 1
Source name Reference antibodies
Organism Homo sapiens
Extracted molecule protein
 
Channel 2
Source name Test antibodies, mix #6
Organism Homo sapiens
Extracted molecule protein
 
 
Description Category: Protein array
Subcategory: Antigen
Scanning Software: GenePix
Software version: 2.0.1.16
Lot batch = 14cl39
 
Submission date May 23, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL172
Series (2)
GSE45 Antibody Arrays Figures 2, 4 and 6
GSE50 Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 76 73 152 682 605 85 77 80 625 705 .83 0 2.04 3.727 93 88 .251 .243 3.98 4.113 3.614 656 80 187 198 154 165 2.04
2 76 75 79 203 123 83 80 83 127 210 .63 0 .686 1.292 92 90 .642 .622 1.557 1.609 1.016 340 52 190 198 193 201 .686
3 75 72 388 2867 2787 88 80 83 2880 2963 .82 0 2.892 6.257 92 98 .139 .135 7.183 7.423 6.269 560 80 189 199 230 240 2.892
4 74 71 159 153 75 82 78 81 78 158 .68 0 -1.037 .458 100 96 2.12 2.051 .472 .487 .417 420 52 189 198 268 277 -1.037
5 76 73 74 99 28 74 71 73 29 102 .07 0 -1.355 .426 86 56 2.643 2.557 .378 .391 .007 340 52 189 197 306 314 -1.355
6 73 71 31 62 3 60 59 61 3 64 .08 0 -3.322 .481 61 18 10.333 9.999 .097 .1 .051 560 80 189 199 343 353 -3.322
7 69 68 43 144 87 59 57 59 90 149 .53 0 1.064 1.767 82 100 .494 .478 2.023 2.091 .799 420 52 190 199 382 391 1.064
8 76 74 39 61 2 62 59 61 2 63 .12 0 -4.238 .198 66 12 19.5 18.87 .051 .053 .072 560 80 189 199 418 428 -4.238
9 66 63 123 71 7 65 64 66 7 73 .23 0 -4.088 .11 100 17 17.571 17.004 .057 .059 .064 340 52 190 198 457 465 -4.088
10 66 64 32 96 14 82 82 85 14 99 .13 0 -1.145 1.235 71 40 2.286 2.212 .438 .452 .153 560 80 189 199 493 503 -1.145
11 99 74 20 111 31 83 80 83 32 115 .13 0 .68 .825 0 26 .645 .624 1.55 1.602 .4 1272 156 223 238 151 166 .68
12 75 73 13 80 2 80 78 81 2 83 .08 0 -2.653 .778 30 17 6.5 6.29 .154 .159 .085 1272 156 223 238 189 204 -2.653
13 82 77 1847 14616 14544 124 72 74 15030 15104 .86 0 3.025 7.369 100 100 .127 .123 7.874 8.137 6.811 340 52 227 235 231 239 3.025
14 75 74 696 12966 12872 97 94 97 13302 13399 .9 0 4.256 18.145 98 100 .054 .052 18.494 19.112 15.627 420 52 227 236 268 277 4.256
15 77 75 577 1757 1685 74 72 74 1741 1816 .82 0 1.593 2.643 96 98 .342 .331 2.92 3.018 2.462 560 80 226 236 306 316 1.593
16 74 71 1627 210 135 79 75 78 140 217 .65 0 -3.544 .08 100 100 12.052 11.662 .083 .086 .068 420 52 226 235 343 352 -3.544
17 71 70 1241 400 325 78 75 78 336 413 .83 0 -1.886 .247 100 100 3.818 3.695 .262 .271 .229 420 52 226 235 381 390 -1.886
18 72 71 48 78 7 72 71 73 7 81 .22 0 -2.73 .423 67 26 6.857 6.636 .146 .151 .135 560 80 226 236 418 428 -2.73
19 71 68 80 252 170 83 82 85 176 260 .45 0 1.135 2.05 78 88 .471 .455 2.125 2.196 1.31 560 80 227 237 457 467 1.135
20 67 66 30 89 5 85 84 87 5 92 .03 0 -2.538 .882 65 26 6 5.806 .167 .172 .044 560 80 227 237 493 503 -2.538

Total number of rows: 1440

Table truncated, full table size 156 Kbytes.




Supplementary data files not provided

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