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Sample GSM1700

Query DataSets for GSM1700

Status

Public on Jun 27, 2002

Title

Antigen array, 10X serum-140

Sample type

protein

Channel 1

Source name

Reference antibodies

Organism

Extracted molecule

protein

Channel 2

Source name

Test antibodies, mix #5

Organism

Extracted molecule

protein

Description

Category: Protein array
Subcategory: Antigen
Scanning Software: GenePix
Software version: 2.0.1.16
Lot batch = 14cl40

Submission date

May 23, 2002

Last update date

Nov 21, 2005

Organization

Stanford Microarray Database (SMD)

E-mail(s)

array@genome.stanford.edu

Phone

650-498-6012

URL

http://genome-www5.stanford.edu/

Department

Stanford University, School of Medicine

Street address

300 Pasteur Drive

City

Stanford

State/province

CA

ZIP/Postal code

94305

Country

USA

Platform ID

Series (2)

GSE45	Antibody Arrays Figures 2, 4 and 6
GSE50	Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN	mean channel 1 background
CH1B_MEDIAN	median channel 1 background
CH1D_MEAN	difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN	mean channel 2 signal
CH2D_MEAN	difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN	mean of channel 2 background
CH2B_MEDIAN	median of channel 2 background
CH2BN_MEDIAN	normalized CH2B_MEDIAN
CH2DN_MEAN	normalized CH2D_MEAN
CH2IN_MEAN	normalized CH2I_MEAN
CORR	simple correlation coefficient of channel 1 and channel 2 pixels
FLAG	user defined flag (default=0)
VALUE	same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD	standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD	standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN	ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN	ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN	ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN	ratio of CH2DN_MEAN and CH1DN_MEAN
REGR	slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX	total number of background pixels
TOT_SPIX	total number of signal (spot) pixels
TOP	vertical, short-axis spot ellipse minimum pixel coordinate
BOT	vertical, short-axis spot ellipse maximum pixel coordinate
LEFT	horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT	horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE	aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF	CH1B_MEAN	CH1B_MEDIAN	CH1D_MEAN	CH2I_MEAN	CH2D_MEAN	CH2B_MEAN	CH2B_MEDIAN	CH2BN_MEDIAN	CH2DN_MEAN	CH2IN_MEAN	CORR	FLAG	VALUE	PIX_RAT2_MEDIAN	PERGTBCH1I_1SD	PERGTBCH2I_1SD	RAT1_MEAN	RAT1N_MEAN	RAT2_MEAN	RAT2N_MEAN	REGR	TOT_BPIX	TOT_SPIX	TOP	BOT	LEFT	RIGHT	UNF_VALUE
1	58	57	41	140	38	104	102	68	25	94	.22	0	-.69	.667	71	36	1.079	1.614	.927	.62	.405	656	80	190	201	92	103	-.69
2	58	57	27	119	2	119	117	78	1	80	.08	0	-4.335	.5	61	16	13.5	20.189	.074	.05	.071	656	80	190	201	129	140	-4.335
3	57	56	174	101	9	94	92	62	6	68	.14	0	-4.854	.125	100	26	19.333	28.912	.052	.035	.039	340	52	193	201	167	175	-4.854
4	60	59	65	1000	908	93	92	62	607	669	.73	0	3.224	13.53	92	100	.072	.107	13.969	9.341	8.175	340	52	194	202	205	213	3.224
5	62	61	24	91	20	72	71	47	13	61	.23	0	-.844	.821	56	43	1.2	1.795	.833	.557	.254	656	80	191	202	241	252	-.844
6	63	61	37	79	7	75	72	48	5	53	.03	0	-2.983	.526	78	22	5.286	7.905	.189	.127	.021	656	80	191	202	278	289	-2.983
7	61	60	52	91	11	82	80	53	7	61	.14	0	-2.822	.377	85	23	4.727	7.069	.212	.141	.125	656	80	192	203	315	326	-2.822
8	61	59	36	148	36	114	112	75	24	99	.35	0	-.581	1.156	67	63	1	1.495	1	.669	.442	656	80	192	203	351	362	-.581
9	59	59	57	105		105	105	70	0	70	.04	0		.357	78	21					.028	656	80	192	203	389	400
10	61	59	31	726	617	114	109	73	413	485	.4	0	3.734	17.5	66	96	.05	.075	19.903	13.309	5.464	656	80	193	204	429	440	3.734
11	60	58	47	134	26	110	108	72	17	90	.25	0	-1.435	.647	77	33	1.808	2.703	.553	.37	.304	656	80	227	238	91	102	-1.435
12	57	55	24	124	5	119	119	80	3	83	.08	0	-2.844	.778	63	21	4.8	7.178	.208	.139	.109	656	80	228	239	128	139	-2.844
13	59	57	314	162	56	108	106	71	37	108	.55	0	-3.068	.189	100	73	5.607	8.385	.178	.119	.175	340	52	230	238	167	175	-3.068
14	60	58	216	330	255	75	75	50	171	221	.7	0	-.341	1.407	98	100	.847	1.267	1.181	.789	.74	340	52	231	239	205	213	-.341
15	61	59	147	101	31	72	70	47	21	68	.52	0	-2.826	.22	87	57	4.742	7.091	.211	.141	.186	656	80	228	239	240	251	-2.826
16	63	62	393	3358	3289	70	69	46	2199	2245	.83	0	2.484	8.379	100	100	.119	.179	8.369	5.596	7.525	420	52	230	239	278	287	2.484
17	61	60	428	1112	1042	72	70	47	697	744	.81	0	.703	2.67	100	100	.411	.614	2.435	1.628	1.943	420	52	230	239	315	324	.703
18	60	59	32	394	314	81	80	53	210	263	.63	0	2.714	8.476	62	87	.102	.152	9.813	6.562	4.949	656	80	229	240	352	363	2.714
19	63	63	146	282	198	86	84	56	132	189	.63	0	-.141	1.364	100	100	.737	1.103	1.356	.907	.961	340	52	231	239	392	400	-.141
20	94	59	34	126	22	106	104	70	15	84	.28	0	-1.209	.872	0	43	1.545	2.311	.647	.433	.348	656	80	230	241	426	437	-1.209

Total number of rows: 1440

Table truncated, full table size 159 Kbytes.

Supplementary data files not provided

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