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Sample GSM1702 Query DataSets for GSM1702
Status Public on Jun 27, 2002
Title Antigen array, 10X serum-142
Sample type protein
 
Channel 1
Source name Reference antibodies
Organism Homo sapiens
Extracted molecule protein
 
Channel 2
Source name Test antibodies, mix #3
Organism Homo sapiens
Extracted molecule protein
 
 
Description Category: Protein array
Subcategory: Antigen
Scanning Software: GenePix
Software version: 2.0.1.16
Lot batch = 14cl42
 
Submission date May 23, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL172
Series (2)
GSE45 Antibody Arrays Figures 2, 4 and 6
GSE50 Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 81 71 350 275 188 90 87 52 112 164 .49 0 -1.641 .476 98 98 1.862 3.12 .537 .321 .325 340 52 228 236 221 229 -1.641
2 82 65 37 72 4 73 68 41 2 43 .09 -100 .727 3 4 9.25 15.5 .108 .065 .042 1272 156 225 240 253 268 -3.954
3 69 62 1233 2438 2372 70 66 39 1416 1455 .87 0 .199 1.875 100 100 .52 .871 1.924 1.148 1.794 420 52 229 238 294 303 .199
4 62 58 229 321 247 75 74 44 147 192 .46 0 -.636 1.016 100 100 .927 1.554 1.079 .644 .311 420 52 230 239 332 341 -.636
5 79 62 66 204 109 100 95 57 65 122 .58 0 -.021 1.544 0 78 .606 1.015 1.652 .986 1.076 340 52 232 240 371 379 -.021
6 64 60 19 90 11 81 79 47 7 54 .12 -100 .9 5 30 1.727 2.894 .579 .345 .132 1272 156 229 244 404 419 -1.533
7 60 59 19 85 92 86 51 -1 51 .04 -100 1 39 10 .079 1272 156 229 244 442 457
8 65 63 48 8733 8650 85 83 50 5162 5212 .73 0 6.749 55 72 100 .006 .009 180.208 107.542 102.942 560 80 234 244 484 494 6.749
9 61 59 216 1284 1201 88 83 50 717 766 .77 0 1.73 5.383 98 100 .18 .301 5.56 3.318 3.869 420 52 235 244 521 530 1.73
10 64 59 35 498 405 104 93 55 242 297 .07 0 2.788 9.561 3 86 .086 .145 11.571 6.905 .103 560 80 236 246 558 568 2.788
11 96 66 53 190 97 99 93 55 58 113 .11 -100 1.5 0 38 .546 .916 1.83 1.092 .09 1272 156 261 276 215 230 .127
12 88 61 992 1424 1355 74 69 41 809 850 .55 -100 .718 7 18 .732 1.227 1.366 .815 .66 1272 156 262 277 253 268 -.295
13 72 62 2277 3473 3403 74 70 42 2031 2073 .89 0 -.165 1.365 98 100 .669 1.121 1.495 .892 1.243 420 52 267 276 294 303 -.165
14 70 63 1215 930 862 71 68 41 514 555 .72 0 -1.24 .774 100 100 1.41 2.362 .709 .423 .469 420 52 268 277 331 340 -1.24
15 68 63 1093 236 158 82 78 47 94 141 .84 0 -3.535 .139 100 100 6.918 11.592 .145 .086 .134 420 52 268 277 369 378 -3.535
16 101 62 2023 11531 11423 116 108 64 6817 6881 .82 0 1.753 5.286 82 100 .177 .297 5.647 3.37 4.561 560 80 269 279 407 417 1.753
17 62 59 2715 3666 3573 96 93 55 2132 2188 .75 0 -.349 1.473 100 100 .76 1.273 1.316 .785 .968 420 52 270 279 444 453 -.349
18 62 60 102 1265 1170 99 95 57 698 755 .7 0 2.775 10.738 92 98 .087 .146 11.471 6.845 8.008 420 52 271 280 482 491 2.775
19 58 57 221 177 92 86 85 51 55 106 .49 0 -2.009 .574 93 88 2.402 4.025 .416 .248 .15 560 80 272 282 520 530 -2.009
20 61 58 15 94 15 82 79 47 9 56 0 -100 1.429 22 33 1 1.676 1 .597 .004 1272 156 270 285 554 569 -.745

Total number of rows: 1440

Table truncated, full table size 158 Kbytes.




Supplementary data files not provided

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