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Sample GSM1702

Query DataSets for GSM1702

Status

Public on Jun 27, 2002

Title

Antigen array, 10X serum-142

Sample type

protein

Channel 1

Source name

Reference antibodies

Organism

Extracted molecule

protein

Channel 2

Source name

Test antibodies, mix #3

Organism

Extracted molecule

protein

Description

Category: Protein array
Subcategory: Antigen
Scanning Software: GenePix
Software version: 2.0.1.16
Lot batch = 14cl42

Submission date

May 23, 2002

Last update date

Nov 21, 2005

Organization

Stanford Microarray Database (SMD)

E-mail(s)

array@genome.stanford.edu

Phone

650-498-6012

URL

http://genome-www5.stanford.edu/

Department

Stanford University, School of Medicine

Street address

300 Pasteur Drive

City

Stanford

State/province

CA

ZIP/Postal code

94305

Country

USA

Platform ID

Series (2)

GSE45	Antibody Arrays Figures 2, 4 and 6
GSE50	Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN	mean channel 1 background
CH1B_MEDIAN	median channel 1 background
CH1D_MEAN	difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN	mean channel 2 signal
CH2D_MEAN	difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN	mean of channel 2 background
CH2B_MEDIAN	median of channel 2 background
CH2BN_MEDIAN	normalized CH2B_MEDIAN
CH2DN_MEAN	normalized CH2D_MEAN
CH2IN_MEAN	normalized CH2I_MEAN
CORR	simple correlation coefficient of channel 1 and channel 2 pixels
FLAG	user defined flag (default=0)
VALUE	same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD	standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD	standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN	ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN	ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN	ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN	ratio of CH2DN_MEAN and CH1DN_MEAN
REGR	slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX	total number of background pixels
TOT_SPIX	total number of signal (spot) pixels
TOP	vertical, short-axis spot ellipse minimum pixel coordinate
BOT	vertical, short-axis spot ellipse maximum pixel coordinate
LEFT	horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT	horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE	aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF	CH1B_MEAN	CH1B_MEDIAN	CH1D_MEAN	CH2I_MEAN	CH2D_MEAN	CH2B_MEAN	CH2B_MEDIAN	CH2BN_MEDIAN	CH2DN_MEAN	CH2IN_MEAN	CORR	FLAG	VALUE	PIX_RAT2_MEDIAN	PERGTBCH1I_1SD	PERGTBCH2I_1SD	RAT1_MEAN	RAT1N_MEAN	RAT2_MEAN	RAT2N_MEAN	REGR	TOT_BPIX	TOT_SPIX	TOP	BOT	LEFT	RIGHT	UNF_VALUE
1	81	71	350	275	188	90	87	52	112	164	.49	0	-1.641	.476	98	98	1.862	3.12	.537	.321	.325	340	52	228	236	221	229	-1.641
2	82	65	37	72	4	73	68	41	2	43	.09	-100		.727	3	4	9.25	15.5	.108	.065	.042	1272	156	225	240	253	268	-3.954
3	69	62	1233	2438	2372	70	66	39	1416	1455	.87	0	.199	1.875	100	100	.52	.871	1.924	1.148	1.794	420	52	229	238	294	303	.199
4	62	58	229	321	247	75	74	44	147	192	.46	0	-.636	1.016	100	100	.927	1.554	1.079	.644	.311	420	52	230	239	332	341	-.636
5	79	62	66	204	109	100	95	57	65	122	.58	0	-.021	1.544	0	78	.606	1.015	1.652	.986	1.076	340	52	232	240	371	379	-.021
6	64	60	19	90	11	81	79	47	7	54	.12	-100		.9	5	30	1.727	2.894	.579	.345	.132	1272	156	229	244	404	419	-1.533
7	60	59	19	85		92	86	51	-1	51	.04	-100		1	39	10					.079	1272	156	229	244	442	457
8	65	63	48	8733	8650	85	83	50	5162	5212	.73	0	6.749	55	72	100	.006	.009	180.208	107.542	102.942	560	80	234	244	484	494	6.749
9	61	59	216	1284	1201	88	83	50	717	766	.77	0	1.73	5.383	98	100	.18	.301	5.56	3.318	3.869	420	52	235	244	521	530	1.73
10	64	59	35	498	405	104	93	55	242	297	.07	0	2.788	9.561	3	86	.086	.145	11.571	6.905	.103	560	80	236	246	558	568	2.788
11	96	66	53	190	97	99	93	55	58	113	.11	-100		1.5	0	38	.546	.916	1.83	1.092	.09	1272	156	261	276	215	230	.127
12	88	61	992	1424	1355	74	69	41	809	850	.55	-100		.718	7	18	.732	1.227	1.366	.815	.66	1272	156	262	277	253	268	-.295
13	72	62	2277	3473	3403	74	70	42	2031	2073	.89	0	-.165	1.365	98	100	.669	1.121	1.495	.892	1.243	420	52	267	276	294	303	-.165
14	70	63	1215	930	862	71	68	41	514	555	.72	0	-1.24	.774	100	100	1.41	2.362	.709	.423	.469	420	52	268	277	331	340	-1.24
15	68	63	1093	236	158	82	78	47	94	141	.84	0	-3.535	.139	100	100	6.918	11.592	.145	.086	.134	420	52	268	277	369	378	-3.535
16	101	62	2023	11531	11423	116	108	64	6817	6881	.82	0	1.753	5.286	82	100	.177	.297	5.647	3.37	4.561	560	80	269	279	407	417	1.753
17	62	59	2715	3666	3573	96	93	55	2132	2188	.75	0	-.349	1.473	100	100	.76	1.273	1.316	.785	.968	420	52	270	279	444	453	-.349
18	62	60	102	1265	1170	99	95	57	698	755	.7	0	2.775	10.738	92	98	.087	.146	11.471	6.845	8.008	420	52	271	280	482	491	2.775
19	58	57	221	177	92	86	85	51	55	106	.49	0	-2.009	.574	93	88	2.402	4.025	.416	.248	.15	560	80	272	282	520	530	-2.009
20	61	58	15	94	15	82	79	47	9	56	0	-100		1.429	22	33	1	1.676	1	.597	.004	1272	156	270	285	554	569	-.745

Total number of rows: 1440

Table truncated, full table size 158 Kbytes.

Supplementary data files not provided

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