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Sample GSM1704 Query DataSets for GSM1704
Status Public on Jun 27, 2002
Title 110 antigens in 10X FCS,mix#2,12-22-99
Sample type protein
 
Channel 1
Source name reference antigens
Organism Homo sapiens
Extracted molecule protein
 
Channel 2
Source name test antigens
Organism Homo sapiens
Extracted molecule protein
 
 
Description Category: Protein array
Subcategory: Antibody
Scanning Software: ScanAlyze
Software version: 2.33
Lot batch = 11cl47
 
Submission date May 23, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL171
Series (2)
GSE46 Antibody Arrays Figure 6 10X FCS
GSE50 Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 899 390 324 367 102 357 265 110 42 152 .551 0 -2.942 .362 56 39 3.176 7.686 .315 .13 .232 1544 137 115 128 155 168 -2.942
2 562 352 388 377 110 295 267 110 45 156 .211 0 -3.093 .31 54 37 3.527 8.535 .284 .117 .034 1544 137 114 127 195 208 -3.093
3 400 350 393 391 115 287 276 114 48 162 .512 0 -3.048 .306 62 37 3.417 8.269 .293 .121 .195 1544 137 114 127 235 248 -3.048
4 802 360 303 1220 925 463 295 122 382 504 .659 0 .335 2.519 61 69 .328 .793 3.053 1.262 1.703 1544 137 114 127 276 289 .335
5 505 353 280 1062 757 415 305 126 313 439 .73 0 .16 2.294 56 60 .37 .895 2.704 1.117 1.926 1544 137 113 126 316 329 .16
6 494 356 281 1273 950 347 323 133 393 526 .743 0 .483 3.201 54 59 .296 .716 3.381 1.397 2.201 1544 137 113 126 356 369 .483
7 507 346 669 314 459 326 135 -5 130 0 0 .247 49 2 0 1544 137 113 126 397 410
8 376 350 190 264 322 313 129 -20 109 0 .31 48 0 1544 137 113 126 437 450
9 507 363 115 267 402 285 118 -7 110 0 .333 37 1 1544 137 112 125 477 490
10 466 426 215 301 19 290 282 117 8 124 .126 0 -4.775 .254 40 4 11.316 27.381 .088 .037 .026 1544 137 154 167 155 168 -4.775
11 425 406 185 292 13 283 279 115 5 121 0 -5.106 .365 40 5 14.231 34.434 .07 .029 1544 137 154 167 195 208 -5.106
12 390 373 600 318 34 288 284 117 14 131 .006 0 -5.416 .256 56 6 17.647 42.7 .057 .023 0 1544 137 154 167 235 248 -5.416
13 433 355 706 1106 797 323 309 128 329 457 0 -1.1 2.212 60 67 .886 2.143 1.129 .467 1544 137 154 167 276 289 -1.1
14 398 349 395 1363 1048 341 315 130 433 563 .72 0 .133 2.498 65 63 .377 .912 2.653 1.096 2.008 1544 137 153 166 316 329 .133
15 411 350 394 1301 972 369 329 136 402 538 .742 0 .028 2.159 67 66 .405 .981 2.467 1.02 1.97 1544 137 153 166 357 370 .028
16 391 358 150 310 338 336 139 -11 128 0 .319 38 1 1544 137 153 166 397 410
17 362 350 130 288 325 322 133 -14 119 0 .457 38 0 1544 137 153 166 437 450
18 477 349 114 284 367 293 121 -4 117 .359 0 .583 29 3 .229 1544 137 152 165 478 491
19 432 420 71 269 294 290 120 -9 111 0 .442 16 0 1544 137 194 207 155 168
20 567 433 105 286 354 298 123 -5 118 0 .218 30 1 1544 137 194 207 195 208

Total number of rows: 1152

Table truncated, full table size 121 Kbytes.




Supplementary data files not provided
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