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Sample GSM1706 Query DataSets for GSM1706
Status Public on Jun 27, 2002
Title 110 antigens in 10X FCS,mix#4,12-22-99
Sample type protein
 
Channel 1
Source name reference antigens
Organism Homo sapiens
Extracted molecule protein
 
Channel 2
Source name test antigens
Organism Homo sapiens
Extracted molecule protein
 
 
Description Category: Protein array
Subcategory: Antibody
Scanning Software: ScanAlyze
Software version: 2.33
Lot batch = 11cl49
 
Submission date May 23, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL171
Series (2)
GSE46 Antibody Arrays Figure 6 10X FCS
GSE50 Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 398 354 256 735 541 221 194 225 629 854 .707 0 1.297 1.695 47 60 .473 .407 2.113 2.457 1.273 1544 137 182 195 124 137 1.297
2 652 334 307 952 744 291 208 241 865 1106 .688 0 1.494 2.31 59 64 .413 .355 2.423 2.818 1.483 1544 137 181 194 164 177 1.494
3 422 334 360 914 692 263 222 258 804 1062 .595 0 1.159 1.878 65 68 .52 .448 1.922 2.233 1.173 1544 137 181 194 204 217 1.159
4 570 348 1482 574 339 327 235 273 394 667 0 0 -1.911 .144 68 13 4.372 3.761 .229 .266 0 1544 137 181 194 245 258 -1.911
5 462 343 716 271 21 321 250 290 25 315 .34 0 -4.84 .212 54 10 34.095 28.64 .029 .035 .007 1544 137 180 193 285 298 -4.84
6 428 340 270 274 16 267 258 300 18 318 .121 0 -3.907 .221 55 7 16.875 15 .059 .067 .037 1544 137 180 193 325 338 -3.907
7 390 345 171 279 28 257 251 291 33 324 .258 0 -2.373 .305 47 9 6.107 5.182 .164 .193 .097 1544 137 180 193 366 379 -2.373
8 411 333 292 298 45 257 253 294 52 346 .145 0 -2.489 .222 52 7 6.489 5.615 .154 .178 .094 1544 137 180 193 406 419 -2.489
9 507 353 134 264 1 280 263 305 1 306 .214 0 -7.066 .309 35 2 134 134 .007 .007 .079 1544 137 179 192 446 459 -7.066
10 418 364 98 224 34 213 190 220 40 260 0 -1.293 .339 29 13 2.882 2.45 .347 .408 1544 137 221 234 124 137 -1.293
11 574 366 104 182 200 192 223 211 .096 0 .345 25 8 .019 1544 137 221 234 164 177
12 454 356 289 264 54 225 210 244 62 306 .907 0 -2.221 .294 38 16 5.352 4.661 .187 .215 .131 1544 137 221 234 204 217 -2.221
13 507 344 383 278 44 247 234 272 51 323 .239 0 -2.909 .181 70 18 8.705 7.51 .115 .133 .033 1544 137 221 234 245 258 -2.909
14 459 345 436 285 32 265 253 294 37 331 .171 0 -3.559 .144 70 10 13.625 11.784 .073 .085 .032 1544 137 220 233 285 298 -3.559
15 420 363 504 294 32 276 262 304 37 341 .069 0 -3.768 .121 71 6 15.75 13.622 .063 .073 .011 1544 137 220 233 326 339 -3.768
16 427 364 354 293 27 272 266 309 31 340 0 -3.513 .42 43 8 13.111 11.419 .076 .088 1544 137 220 233 366 379 -3.513
17 490 359 1112 623 358 270 265 308 416 724 1.837 0 -1.419 .228 51 13 3.106 2.673 .322 .374 1.73 1544 137 220 233 406 419 -1.419
18 459 373 600 257 270 263 305 298 .013 0 .102 59 5 .001 1544 137 219 232 447 460
19 545 395 416 311 110 267 201 233 128 361 .947 0 -1.7 .302 43 17 3.782 3.25 .264 .308 .342 1544 137 261 274 124 137 -1.7
20 601 387 92 224 16 255 208 241 19 260 .031 0 -2.276 .365 18 9 5.75 4.842 .174 .207 .004 1544 137 261 274 164 177 -2.276

Total number of rows: 1152

Table truncated, full table size 123 Kbytes.




Supplementary data files not provided
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