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Sample GSM170603 Query DataSets for GSM170603
Status Public on Feb 22, 2007
Title Renal scarring 1week rep1
Sample type RNA
 
Channel 1
Source name renal_scarring_1week_rep1.
Organism Rattus norvegicus
Characteristics Strain: wister rat
Gender: female
Age: 4 weeks old
Tissue: kidney
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit (QIAGEN)
Label Cy5
Label protocol Agilent In-situ oligo DNA microarray kit
Low RNA Input lilnear-amplify and labeling protocol
 
Channel 2
Source name renal_scarring_normal_rep1.
Organism Rattus norvegicus
Characteristics Strain: wister rat
Gender: female
Age: 4 weeks old
Tissue: kidney
Extracted molecule total RNA
Extraction protocol RNeasy Mini Kit (QIAGEN)
Label Cy3
Label protocol Agilent In-situ oligo DNA microarray kit
Low RNA Input lilnear-amplify and labeling protocol
 
 
Hybridization protocol Gene Expression Hybridization Kit (Agilent)
Scan protocol Agilent microarray scanner system (Agilent)
Description Kidney injected E.coli strain DS 17 after 1week
Data processing Data processed with FeatureExrtraction v7.1
 
Submission date Feb 21, 2007
Last update date Feb 21, 2007
Contact name Ichino Manabu
E-mail(s) michino@fujita-hu.ac.jp
Organization name Fujita Health University
Department Medical
Lab urology
Street address Kutsukake-cho Denngakugakubo 1-98
City Toyoake
State/province Aichi
ZIP/Postal code 470-1192
Country Japan
 
Platform ID GPL890
Series (1)
GSE7087 Global gene expression profiling on renal scarring in rat model of pyelonephritis

Data table header descriptions
ID_REF
VALUE Log10 Ratio of normalized Cy5 (red) signal to normalized Cy3 (green) signal
PValueLogRatio p-value of the log ratio as determined by Agilent error model
gProcessedSignal normalized and background subtracted Cy3 (green) signal
rProcessedSignal normalized and background subtracted Cy5 (red) signal
gMeanSignal raw Cy3 (green) signal intensity
rMeanSignal raw Cy5 (red) signal intensity

Data table
ID_REF VALUE PValueLogRatio gProcessedSignal rProcessedSignal gMeanSignal rMeanSignal
1 -1.79E+00 1.15E-34 9.31E+03 1.52E+02 9.95E+02 7.55E+01
2 0.00E+00 1.00E+00 3.00E+01 2.05E+01 6.27E+01 4.35E+01
3 -1.22E-01 2.60E-01 1.84E+02 1.39E+02 8.31E+01 7.16E+01
4 -2.74E-01 5.24E-02 1.58E+02 8.43E+01 8.02E+01 6.04E+01
5 2.23E-02 7.51E-01 2.99E+02 3.14E+02 9.44E+01 1.07E+02
6 -1.15E-01 4.17E-02 6.49E+02 4.97E+02 1.29E+02 1.45E+02
7 -2.00E+00 1.99E-35 9.51E+03 4.91E+01 1.01E+03 5.44E+01
8 2.07E-02 6.82E-01 1.28E+03 1.34E+03 1.92E+02 3.16E+02
9 4.42E-02 8.64E-01 5.76E+01 6.38E+01 6.99E+01 5.65E+01
10 1.90E-01 2.09E-04 3.23E+03 5.00E+03 4.09E+02 9.99E+02
11 -1.80E-01 1.46E-01 1.66E+02 1.09E+02 8.14E+01 6.62E+01
12 4.17E-02 7.33E-01 1.30E+02 1.44E+02 7.78E+01 7.26E+01
13 7.14E-03 8.87E-01 1.57E+03 1.59E+03 2.23E+02 3.65E+02
14 -2.00E+00 1.67E-35 1.00E+04 4.16E+01 1.06E+03 5.24E+01
15 -7.95E-02 1.08E-01 2.75E+04 2.29E+04 3.52E+03 3.75E+03
16 6.15E-02 3.24E-01 3.74E+02 4.31E+02 1.02E+02 1.31E+02
17 1.52E-01 5.69E-02 2.07E+02 2.94E+02 8.61E+01 1.03E+02
18 -5.67E-01 1.04E-01 8.02E+01 2.17E+01 7.25E+01 4.87E+01
19 -8.50E-02 2.08E-01 3.69E+02 3.04E+02 1.02E+02 1.05E+02
20 -7.02E-01 1.32E-02 1.13E+02 2.24E+01 7.62E+01 4.86E+01

Total number of rows: 21575

Table truncated, full table size 1264 Kbytes.




Supplementary data files not provided
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