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Sample GSM1707 Query DataSets for GSM1707
Status Public on Jun 27, 2002
Title 110 antigens in 10X FCS,mix#5
Sample type protein
 
Channel 1
Source name reference antigens
Organism Homo sapiens
Extracted molecule protein
 
Channel 2
Source name test antigens
Organism Homo sapiens
Extracted molecule protein
 
 
Description Category: Protein array
Subcategory: Antibody
Scanning Software: ScanAlyze
Software version: 2.33
Lot batch = 11cl50
 
Submission date May 23, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL171
Series (2)
GSE46 Antibody Arrays Figure 6 10X FCS
GSE50 Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 343 325 335 629 438 195 191 160 368 528 .302 0 .135 1.326 64 70 .765 .911 1.307 1.098 .185 1544 137 197 210 157 170 .135
2 329 304 332 617 411 212 206 173 345 518 .484 0 .056 1.154 65 72 .808 .962 1.238 1.04 .517 1544 137 198 211 197 210 .056
3 353 308 348 653 434 225 219 184 364 548 .531 0 .067 1.27 68 66 .802 .955 1.247 1.047 .62 1544 137 199 212 237 250 .067
4 318 300 286 214 234 233 196 -16 180 0 .165 53 2 1544 137 200 213 278 291
5 451 315 252 227 318 239 201 -10 191 0 .241 61 2 1544 137 201 214 318 331
6 409 327 236 264 15 259 249 209 13 222 .027 0 -4.228 .123 54 5 15.733 18.735 .064 .053 .019 1544 137 202 215 358 371 -4.228
7 368 351 167 356 97 267 259 218 81 299 .244 0 -1.036 .543 40 34 1.722 2.05 .581 .488 .061 1544 137 203 216 399 412 -1.036
8 381 369 189 375 92 287 283 238 77 315 .103 0 -1.291 .556 46 28 2.054 2.446 .487 .409 .058 1544 137 204 217 439 452 -1.291
9 369 348 105 345 82 266 263 221 69 290 .088 0 -.609 .954 30 27 1.28 1.525 .781 .656 .066 1544 137 205 218 479 492 -.609
10 386 328 214 216 5 221 211 177 4 181 .004 0 -5.671 .296 39 2 42.8 50.966 .023 .02 0 1544 137 236 249 155 168 -5.671
11 376 351 88 232 10 231 222 186 8 195 0 -3.389 .524 22 8 8.8 10.479 .114 .095 1544 137 238 251 196 209 -3.389
12 485 365 212 250 2 324 248 208 2 210 0 -6.98 .459 40 8 106 126.223 .009 .008 1544 137 239 252 236 249 -6.98
13 376 339 297 312 52 262 260 218 44 262 .189 0 -2.766 .183 61 16 5.712 6.801 .175 .147 .047 1544 137 240 253 277 290 -2.766
14 374 332 365 342 74 280 268 225 62 287 .4 0 -2.554 .215 66 24 4.932 5.873 .203 .17 .112 1544 137 241 254 317 330 -2.554
15 357 346 514 366 81 289 285 239 68 307 .472 0 -2.918 .187 68 26 6.346 7.556 .158 .132 .123 1544 137 242 255 357 370 -2.918
16 374 363 122 287 300 295 248 -7 241 0 .34 37 2 1544 137 243 256 398 411
17 417 394 161 719 398 326 321 270 334 604 .465 0 1.054 .524 36 5 .405 .482 2.472 2.076 6.945 1544 137 244 257 438 451 1.054
18 408 386 173 326 8 320 318 267 7 274 0 -4.687 .373 43 4 21.625 25.751 .046 .039 1544 137 245 258 478 491 -4.687
19 376 356 808 236 249 238 200 -2 198 .225 0 .298 35 2 .009 1544 137 276 289 154 167
20 398 350 153 254 12 251 242 203 10 213 .192 0 -3.924 .206 48 6 12.75 15.182 .078 .066 .076 1544 137 278 291 195 208 -3.924

Total number of rows: 1152

Table truncated, full table size 123 Kbytes.




Supplementary data files not provided
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