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| Status |
Public on Jun 17, 2015 |
| Title |
GLU rep2 |
| Sample type |
SRA |
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| Source name |
mycelia
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| Organism |
Thermomyces lanuginosus |
| Characteristics |
strain: P134
treatment: mycelia cultured on glucose
age: 2-day old mycelia
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| Extracted molecule |
total RNA |
| Extraction protocol |
none provided by the submitter of this dataset
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
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| Data processing |
Quality control: clean data(clean reads) were obtained by removing reads containing adapter, reads containing ploy-N and low quality reads from raw data.
Transcriptome assembly:The left files (read1 files) from all libraries/samples were pooled into one big left.fq file, and right files (read2 files) into one big right.fq file. Transcriptome assembly was accomplished based on the left.fq and right.fq using Trinity (r20140413p1) with min_kmer_cov set to 2 by default and all other parameters set default.
Quantification of gene expression levels: RSEM (v1.2.15, bowtie2 mismatch 0)
Supplementary_files_format_and_content: tab-delimited text files include FPKM values for each Sample
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| Submission date |
Jun 10, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Shan Li |
| E-mail(s) |
shineyong27@aliyun.com
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| Organization name |
Novogene institute
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| Street address |
No.38 Xueqing Road, Haidian Distric
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| City |
Beijing |
| ZIP/Postal code |
100083 |
| Country |
China |
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| Platform ID |
GPL20314 |
| Series (1) |
| GSE69763 |
Transcriptome Analysis of Avicel Utilization by Thermomyces lanuginosus |
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| Relations |
| BioSample |
SAMN03769269 |
| SRA |
SRX1055815 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM1708524_GLU2.txt.gz |
44.7 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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