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Sample GSM1710 Query DataSets for GSM1710
Status Public on Jun 27, 2002
Title 110 antigens in 100X FCS,mix#2
Sample type protein
 
Channel 1
Source name reference antigens
Organism Homo sapiens
Extracted molecule protein
 
Channel 2
Source name test antigens
Organism Homo sapiens
Extracted molecule protein
 
 
Description Category: Protein array
Subcategory: Antibody
Scanning Software: ScanAlyze
Software version: 2.33
Lot batch = 11cl53
 
Submission date May 23, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL171
Series (2)
GSE47 Antibody Arrays Figure 6 100X FCS
GSE50 Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 731 704 302 844 99 789 745 730 97 827 .389 0 -1.638 .48 36 5 3.051 3.113 .328 .321 .246 1544 137 274 287 198 211 -1.638
2 673 652 262 765 50 726 715 700 50 750 .49 0 -2.39 .355 40 5 5.24 5.24 .191 .191 .288 1544 137 275 288 237 250 -2.39
3 1105 715 288 771 41 932 730 715 40 755 .198 0 -2.848 .308 36 2 7.024 7.2 .142 .139 .091 1544 137 277 290 277 290 -2.848
4 1031 703 724 1290 595 826 695 681 583 1264 0 0 -.312 3.278 23 56 1.217 1.242 .822 .805 0 1544 137 278 291 317 330 -.312
5 813 702 144 1525 730 886 795 779 716 1495 .478 0 2.314 3.398 19 60 .197 .201 5.069 4.972 1.31 1544 137 280 293 356 369 2.314
6 770 754 215 1880 944 949 936 917 926 1843 .463 0 2.107 3.944 20 67 .228 .232 4.391 4.307 1.467 1544 137 281 294 396 409 2.107
7 836 769 259 1061 82 1000 979 959 81 1040 .569 0 -1.677 .701 27 7 3.159 3.198 .317 .313 .509 1544 137 283 296 436 449 -1.677
8 842 825 113 1091 1109 1105 1083 1069 .053 0 .881 8 1 .063 1544 137 284 297 476 489
9 901 891 103 1089 1246 1238 1213 1067 .251 0 .843 5 0 .385 1544 137 286 299 515 528
10 759 732 105 862 5 869 857 840 5 845 .182 0 -4.392 .685 8 1 21 21 .048 .048 .166 1544 137 313 326 196 209 -4.392
11 805 735 278 1019 174 871 845 828 171 999 .525 0 -.701 .75 30 13 1.598 1.626 .626 .615 .633 1544 137 315 328 236 249 -.701
12 858 711 283 817 56 785 761 746 54 800 .087 0 -2.39 .585 24 3 5.054 5.241 .198 .191 .027 1544 137 316 329 275 288 -2.39
13 824 705 392 1355 596 803 759 744 584 1328 .334 0 .575 1.612 48 59 .658 .671 1.52 1.49 .427 1544 137 318 331 315 328 .575
14 1055 734 304 1333 529 1098 804 788 518 1306 .625 0 .769 1.597 35 50 .575 .587 1.74 1.704 1.042 1544 137 320 333 355 368 .769
15 830 770 537 2038 1097 940 941 922 1076 1998 .305 0 1.003 2.222 45 59 .49 .499 2.043 2.004 .307 1544 137 321 334 395 408 1.003
16 822 805 143 1137 67 1079 1070 1049 65 1114 .17 0 -1.138 .848 14 3 2.134 2.2 .469 .455 .171 1544 137 323 336 434 447 -1.138
17 863 851 140 1179 14 1174 1165 1142 13 1155 .235 0 -3.429 .854 12 3 10 10.769 .1 .093 .241 1544 137 324 337 474 487 -3.429
18 939 926 56 1108 1339 1336 1309 1086 .206 0 1.024 2 0 .209 1544 137 326 339 514 527
19 833 749 75 816 885 864 847 800 0 .402 6 0 1544 137 353 366 195 208
20 985 778 175 866 992 873 855 849 .644 0 .52 5 0 .13 1544 137 355 368 234 247

Total number of rows: 1152

Table truncated, full table size 125 Kbytes.




Supplementary data files not provided
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