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Sample GSM1711 Query DataSets for GSM1711
Status Public on Jun 27, 2002
Title 110 antigens in 100X FCS,mix#3,12-22-99
Sample type protein
 
Channel 1
Source name reference antigens
Organism Homo sapiens
Extracted molecule protein
 
Channel 2
Source name test antigens
Organism Homo sapiens
Extracted molecule protein
 
 
Description Category: Protein array
Subcategory: Antibody
Scanning Software: ScanAlyze
Software version: 2.33
Lot batch = 11cl54
 
Submission date May 23, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL171
Series (2)
GSE47 Antibody Arrays Figure 6 100X FCS
GSE50 Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 1185 745 338 662 28 669 634 263 12 274 .01 0 -4.865 .277 41 0 12.071 29.134 .083 .034 .003 1544 137 277 290 144 157 -4.865
2 750 692 394 649 17 646 632 262 7 269 .058 0 -5.806 .261 52 0 23.176 55.936 .043 .018 .018 1544 137 276 289 184 197 -5.806
3 862 757 382 724 48 807 676 280 20 300 .266 0 -4.264 .265 45 1 7.958 19.207 .126 .052 .305 1544 137 276 289 224 237 -4.264
4 1336 781 284 620 868 645 267 -10 257 .023 0 .37 22 1 .006 1544 137 276 289 264 277
5 2625 1281 2489 1468 848 934 620 257 351 608 0 0 -2.825 .081 62 8 2.935 7.084 .341 .141 0 1544 137 276 289 305 318 -2.825
6 2425 822 1431 782 30 1103 752 312 12 324 .479 0 -6.847 .119 47 12 47.7 115.122 .021 .009 .05 1544 137 276 289 345 358 -6.847
7 725 698 181 794 6 795 788 327 2 329 .007 0 -6.186 .626 20 0 30.167 72.806 .033 .014 .006 1544 137 276 289 385 398 -6.186
8 779 711 258 720 846 771 319 -21 298 0 .91 16 0 1544 137 276 289 425 438
9 1476 764 336 708 855 718 297 -4 293 .027 0 .25 21 2 .005 1544 137 276 289 466 479
10 1074 805 131 815 88 925 727 301 36 338 .101 0 -1.845 .735 12 5 1.489 3.593 .672 .278 .06 1544 137 317 330 143 156 -1.845
11 846 778 147 804 50 760 754 312 21 333 .045 0 -2.827 .579 17 7 2.94 7.096 .34 .141 .036 1544 137 316 329 184 197 -2.827
12 835 823 171 967 165 804 802 332 68 401 0 -1.323 .919 14 10 1.036 2.501 .965 .4 1544 137 316 329 224 237 -1.323
13 1220 822 274 1882 1058 951 824 341 438 780 .13 0 .678 3.533 21 61 .259 .625 3.861 1.6 .23 1544 137 316 329 264 277 .678
14 1317 875 334 2319 1603 754 716 297 664 961 .29 0 .992 5.63 31 62 .208 .503 4.799 1.989 1.076 1544 137 316 329 304 317 .992
15 2132 868 1903 2371 1559 1438 812 336 646 982 0 0 -1.559 4.185 29 70 1.221 2.946 .819 .339 0 1544 137 316 329 345 358 -1.559
16 742 719 277 865 948 942 390 -32 358 .178 0 .581 7 0 .015 1544 137 316 329 385 398
17 835 749 825 917 23 930 894 370 10 380 .484 0 -6.436 .402 16 1 35.87 86.57 .028 .012 .112 1544 137 316 329 425 438 -6.436
18 1409 780 3779 4997 4245 1055 752 312 1759 2070 0 0 -1.103 .535 36 15 .89 2.149 1.123 .465 0 1544 137 316 329 465 478 -1.103
19 853 836 80 787 830 820 340 -14 326 0 .938 3 0 1544 137 357 370 143 156
20 886 840 120 801 838 828 343 -11 332 0 .423 6 0 1544 137 356 369 184 197

Total number of rows: 1152

Table truncated, full table size 127 Kbytes.




Supplementary data files not provided
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