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Sample GSM1714 Query DataSets for GSM1714
Status Public on Jun 27, 2002
Title 110 antigens in 100X FCS,mix#6,12-22-99
Sample type protein
 
Channel 1
Source name reference antigens
Organism Homo sapiens
Extracted molecule protein
 
Channel 2
Source name test antigens
Organism Homo sapiens
Extracted molecule protein
 
 
Description Category: Protein array
Subcategory: Antibody
Scanning Software: ScanAlyze
Software version: 2.33
Lot batch = 11cl57
 
Submission date May 23, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL171
Series (2)
GSE47 Antibody Arrays Figure 6 100X FCS
GSE50 Antibody Array Figures

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log2 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 792 764 350 1275 1465 1463 1030 897 0 .632 39 0 1544 137 347 360 150 163
2 985 758 386 1252 1533 1421 1000 881 0 .876 45 0 1544 137 347 360 190 203
3 783 772 363 1327 1577 1571 1106 934 0 .649 43 0 1544 137 348 361 230 243
4 820 815 189 1748 1804 1800 1267 1230 .006 0 1.399 18 0 .011 1544 137 349 362 271 284
5 826 804 258 1814 1893 1877 1321 1277 0 .983 25 0 1544 137 349 362 311 324
6 796 786 189 1852 5 1854 1847 1300 4 1304 .762 0 -5.562 1.045 15 1 37.8 47.25 .026 .021 1.735 1544 137 350 363 351 364 -5.562
7 771 763 75 1454 1805 1796 1264 1023 0 2.51 7 0 1544 137 351 364 392 405
8 1026 787 55 1484 2023 1862 1311 1045 .021 0 2.031 5 0 .071 1544 137 352 365 432 445
9 1037 853 427 1652 2070 2014 1418 1163 .513 0 1.577 14 1 .199 1544 137 352 365 472 485
10 811 796 157 1461 1562 1552 1092 1028 0 .624 16 0 1544 137 386 399 149 162
11 811 799 164 1467 1583 1580 1112 1033 0 1.136 17 0 1544 137 387 400 189 202
12 822 805 158 1679 1697 1690 1190 1182 0 1.103 12 0 1544 137 388 401 229 242
13 850 832 312 1757 1880 1871 1317 1237 0 .739 35 0 1544 137 389 402 270 283
14 876 839 353 1903 2020 2017 1420 1340 0 1.01 36 0 1544 137 389 402 310 323
15 857 790 465 1696 1848 1830 1288 1194 0 2.528 54 0 1544 137 390 403 351 364
16 808 792 75 1634 1923 1902 1339 1150 .128 0 3.068 2 1 .511 1544 137 391 404 391 404
17 891 828 77 1794 2103 2066 1454 1263 .063 0 4.303 2 0 .275 1544 137 392 405 431 444
18 909 822 98 1687 2071 2035 1433 1188 .24 0 1.316 8 1 .867 1544 137 392 405 472 485
19 856 843 160 1523 1704 1693 1192 1072 .072 0 .968 4 0 .02 1544 137 426 439 148 161
20 872 860 94 1471 1734 1731 1219 1035 0 .744 3 0 1544 137 427 440 188 201

Total number of rows: 1152

Table truncated, full table size 122 Kbytes.




Supplementary data files not provided
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