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Sample GSM173 Query DataSets for GSM173
Status Public on Jul 19, 2001
Title Renal cell carcinoma: rccc-26, tumor 2 (part 1 of 2)
Sample type RNA
 
Source name renal clear cell carcinoma (primary tumor)
Organism Homo sapiens
Extracted molecule total RNA
 
Description clinical.stage=III
grade.of.malignancy=2
type=clearcell
tumor.site=kidney
multiplefoci=FALSE
survival.months=NA
died=NA
tumorsize.cm=5
comment=The part 2 filters are from batch ReImage3_jan2000. On these, clone 1 has not been spotted in fields 5 and 6. The part 1 filters are from ReImage3_nov99.
sex=m
age=62
RNA=poly-A+
For spot quality assessment / error bars, use duplicate spots (each clone is spotted twice) and foreground/background ratio
Keywords = renal clear cell carcinoma
Keywords = kidney
Lot batch = batch=ReImage3_nov99 filter=3624247 reuse=3 date=14-Jun-2000
 
Submission date Jul 19, 2001
Last update date Oct 04, 2005
Contact name Wolfgang Huber
E-mail(s) w.huber@dkfz.de
Phone +49-6221-424709
Fax +49-6221-423470
URL http://www.dkfz-heidelberg.de/abt0840
Organization name German Cancer Research Center
Department Molecular Genome Analysis
Street address Im Neuenheimer Feld 280
City Heidelberg
ZIP/Postal code 69120
Country Germany
 
Platform ID GPL9
Series (1)
GSE3 Renal Cell Carcinoma Differential Expression

Data table header descriptions
ID_REF
SIGNAL_RAW Mean spot intensity
BKD_RAW 33 percent quantile of intensities of surrounding pixels within a 4x4 block
VALUE SIGNAL_RAW-SIGNAL_BKD

Data table
ID_REF SIGNAL_RAW BKD_RAW VALUE
1 8448 8464 -16
2 2227 8464 -6237
3 3814 8464 -4650
4 7232 8464 -1232
5 12571 8464 4107
6 172255 8464 163791
7 137941 8464 129477
8 13484 8464 5020
9 14814 8464 6350
10 8964 8464 500
11 18472 8464 10008
12 8992 8464 528
13 147666 8464 139202
14 8937 8464 473
15 8758 8464 294
16 4309 8464 -4155
17 4093 5929 -1836
18 8724 5929 2795
19 9509 5929 3580
20 2395 5929 -3534

Total number of rows: 36864

Table truncated, full table size 820 Kbytes.




Supplementary data files not provided

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