|
| Status |
Public on May 01, 2007 |
| Title |
9274 |
| Sample type |
genomic |
| |
|
| Source name |
Bone marrow with 85% blasts
|
| Organism |
Homo sapiens |
| Characteristics |
Immunotype: common ALL; Age: 8.4 yrs; Gender: F
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
QiaAmp purification kit (Qiagen)
|
| Label |
biotin
|
| Label protocol |
Biotinylated DNA was prepared according to the standard Affymetrix protocol from 250 ng genomic DNA (Genechip Mapping 500k assay manual 701930 Rev.3 or 100k assay manual 701684 Rev.3, Affymetrix).
|
| |
|
| Hybridization protocol |
Hybridizations were performed according to the standard Affymetrix protocol from 250 ng genomic DNA (Genechip Mapping 500k assay manual 701930 Rev.3 or 100k assay manual 701684 Rev.3, Affymetrix) using an Affymetrix hybridisation oven 640 and an Affymetrix Fluidic station 450.
|
| Scan protocol |
Scanning performed according to the standard Affymetrix protocol from 250 ng genomic DNA (Genechip Mapping 500k assay manual 701930 Rev.3 or 100k assay manual 701684 Rev.3, Affymetrix) using an Affymetrix scanner 3000.
|
| Description |
primary ALL diagnosis sample
|
| Data processing |
copy number detection using CNAG2.0 software (http://www.genome.umin.jp/)
|
| |
|
| Submission date |
Mar 13, 2007 |
| Last update date |
Mar 13, 2007 |
| Contact name |
Roland P. Kuiper |
| E-mail(s) |
r.kuiper@antrg.umcn.nl, e.verwiel@antrg.umcn.nl
|
| Phone |
+31243610868
|
| Fax |
+31243668752
|
| Organization name |
Radboud University Nijmegen Medical Centre
|
| Department |
Human Genetics
|
| Street address |
Geert Grooteplein 10
|
| City |
Nijmegen |
| ZIP/Postal code |
6525GA |
| Country |
Netherlands |
| |
|
| Platform ID |
GPL3718 |
| Series (1) |
| GSE7255 |
Genomic profiling data of 40 childhood leukemia patients |
|
