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Sample GSM1749 Query DataSets for GSM1749
Status Public on Jun 07, 2002
Title CF-1 transgenic 5mo ovary B (granulosa cell tumor)
Sample type RNA
 
Source name Transgenic (LHCTP) ovary from 5 month old CF-1 mouse (granulosa cell tumor)
Organism Mus musculus
Extracted molecule total RNA
 
Description Transgenic (LHCTP), granulosa cell tumor sample from ovary from 2 month old CF-1 mouse for use in gene expression profiling experiment on LH hypersecreting mice (LHCTP)
 
Submission date Jun 05, 2002
Last update date May 27, 2005
Contact name John H Nilson
E-mail(s) jhn@po.cwru.edu
Phone 216-368-4497
Organization name Case Western Reserve University, School of Medicine
Department Pharmacology
Lab Nilson
Street address 2109 Adelbert Road
City Cleveland
State/province OH
ZIP/Postal code 44106
Country USA
 
Platform ID GPL76
Series (1)
GSE499 Granulosa cell tumorigenesis

Data table header descriptions
ID_REF
Positive positive probe pair
Negative negative probe pair
Pairs pairs
Pairs Used pairs used
Pairs InAvg pairs used in average
Pos Fraction positive probe pairs/total probe pairs
Log Avg log average ratio
Pos/Neg pos/neg
VALUE average difference
ABS_CALL present or absent or marginal

Data table
ID_REF Positive Negative Pairs Pairs Used Pairs InAvg Pos Fraction Log Avg Pos/Neg VALUE ABS_CALL
IL2_at 6 5 19 19 17 0.32 1.54 1.2 -81 A
IL10_at 8 6 20 20 19 0.4 1.33 1.3 100.6 A
GMCSF_at 5 8 20 20 18 0.25 -0.18 0.6 -381.5 A
TNFRII_at 9 3 20 20 18 0.45 1.51 3 136.6 P
MIP1-B_at 11 3 20 20 18 0.55 1.66 3.7 728.7 P
IL4_at 13 3 20 20 19 0.65 2.32 4.3 100.3 P
IL12_P40_at 5 7 20 20 18 0.25 0.12 0.7 -72.8 A
TNFa_at 10 7 20 20 18 0.5 1.03 1.4 63.8 A
TCRa_at 5 9 20 20 19 0.25 -0.76 0.6 -696.3 A
AFFX-BioB-5_at 12 5 20 20 19 0.6 2.64 2.4 500.7 A
AFFX-BioB-M_at 14 2 20 20 18 0.7 3.26 7 471.1 P
AFFX-BioB-3_at 11 2 20 20 19 0.55 2.6 5.5 633.7 P
AFFX-BioC-5_at 17 1 20 20 19 0.85 5.39 17 2122.6 P
AFFX-BioC-3_at 18 0 20 20 20 0.9 4.82 Undef 2438.9 P
AFFX-BioDn-5_at 17 1 20 20 18 0.85 5.4 17 1872.8 P
AFFX-BioDn-3_at 16 2 20 20 18 0.8 5.57 8 7213.5 P
AFFX-CreX-5_at 19 0 20 20 20 0.95 8.41 Undef 19488.2 P
AFFX-CreX-3_at 20 0 20 20 20 1 8.27 Undef 22785 P
AFFX-BioB-5_st 8 6 20 20 20 0.4 0.72 1.3 619.3 A
AFFX-BioB-M_st 9 7 20 20 18 0.45 0.73 1.3 -212 A

Total number of rows: 6595

Table truncated, full table size 320 Kbytes.




Supplementary data files not provided
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