NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM179838 Query DataSets for GSM179838
Status Public on Apr 06, 2007
Title Colon - 254435
Sample type RNA
 
Source name Colon
Organism Homo sapiens
Extracted molecule total RNA
 
Description Quality metric = 28S to 18S: 1.6
Patient Age: 60-70
Gender: Male
Ethnic Background: Caucasian
Tobacco Use : Yes
Years of Tobacco Use: 21-25
Type of Tobacco Use: Cigarettes
Alcohol Consumption?: Yes
Family History of Cancer?: Yes
Days from Patient Diagnosis to Excision: 10
Presenting Symptoms: Abdominal Pain
Presenting Symptoms: Bright red stools
Presenting Symptoms: Diarrhea
Screening studies performed?: Yes
Diagnosis made by: Colonoscopy
Pathological T: 2
Pathological N: 0
Pathological M: 0
Pathological Stage: 1
Pathological Grade: 2
Pathological Multiple Tumors: No
Pathological Stage During or Following Multimodality Therapy: No
Pathological Dukes Stage: A
Primary Site: Colon
Histology: Adenocarcinoma
 
Submission date Apr 02, 2007
Last update date Aug 28, 2018
Contact name Erin Curley
E-mail(s) ecurley@intgen.org
Phone 602-343-8808
Fax 602-343-8440
URL http://www.intgen.org
Organization name IGC
Department
Lab expO
Street address 445 N. 5th Street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL570
Series (1)
GSE2109 Expression Project for Oncology (expO)
Relations
Reanalyzed by GSE64985
Reanalyzed by GSE119087

Data table header descriptions
ID_REF The name of the probe set, blank for control probes
VALUE The signal value calculated by MAS5, normalized
ABS_CALL The detection value calculated by the MAS5
DETECTION P-VALUE The detection p-value calculated by the MAS5

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 1802.2 P 0.000195
AFFX-BioB-M_at 2290.2 P 0.000044
AFFX-BioB-3_at 1415.3 P 0.000044
AFFX-BioC-5_at 4293.8 P 0.000052
AFFX-BioC-3_at 5524.0 P 0.000044
AFFX-BioDn-5_at 12718.7 P 0.000044
AFFX-BioDn-3_at 19597.1 P 0.000052
AFFX-CreX-5_at 54738.6 P 0.000052
AFFX-CreX-3_at 61184.2 P 0.000044
AFFX-DapX-5_at 5066.6 P 0.000044
AFFX-DapX-M_at 8056.7 P 0.000110
AFFX-DapX-3_at 7571.9 P 0.000044
AFFX-LysX-5_at 434.6 P 0.000052
AFFX-LysX-M_at 758.8 P 0.000258
AFFX-LysX-3_at 1082.0 P 0.000044
AFFX-PheX-5_at 914.5 P 0.000044
AFFX-PheX-M_at 912.4 P 0.000044
AFFX-PheX-3_at 785.3 P 0.000044
AFFX-ThrX-5_at 1208.4 P 0.000060
AFFX-ThrX-M_at 1515.8 P 0.000044

Total number of rows: 54675

Table truncated, full table size 1470 Kbytes.




Supplementary file Size Download File type/resource
GSM179838.CEL.gz 4.7 Mb (ftp)(http) CEL
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap