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Sample GSM179987 Query DataSets for GSM179987
Status Public on Dec 01, 2007
Title Liver_Lb570
Sample type RNA
 
Source name Mouse Liver Strain C57BL/6J
Organism Mus musculus
Characteristics C57BL/6J. Male mice at about 120 days
Extracted molecule total RNA
Extraction protocol TRIzol extraction
Label digioxigenin
Label protocol Digoxigenin labeled cRNA was prepared according to Applied Biosystems nanoamp RT-IVT protocol
 
Hybridization protocol Hybridization was performed according to Applied Biosystems Chemiluminescence Detection Kit Protocol (PN 4339627) using 10 ug fragmented cRNA
Scan protocol Image was captured using CCD camera came with AB1700 Microarray Analyzer
Description Background strain
Data processing Quantile normalization was performed
 
Submission date Apr 02, 2007
Last update date Apr 10, 2007
Contact name Yongming Sun
E-mail(s) yongming.sun@appliedbiosystems.com
Phone 650-638-6879
Organization name Applied Biosystems
Street address 850 Lincoln Center Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL2995
Series (1)
GSE7431 Whole genome survey of the obesity model lean congenic mice B6.C-D7Mit353

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
S/N Signal-to-noise ratio. Used for probe detectability. A probe with S/N >=3 is considered detected, otherwise, it is not detected
FLAG Quantification error code. A FLAG > 5000 indicates quantification error.
UNF_VALUE Log2 transformed quantile normalized signal intensity

Data table
ID_REF VALUE S/N FLAG UNF_VALUE
297784 14.41965252 55.3 1 14.41965252
297907 -0.3 1 8.644168408
297912 11.11889365 19.7 1 11.11889365
297935 0.4 1 8.136523541
297990 2 1 9.556662771
297993 -1.1 1 7.023153987
298000 13.02025516 26.4 1 13.02025516
298038 -0.7 1 8.051310114
298121 0.6 1 7.361417024
298130 0.6 1 9.11346348
298143 12.58658827 18 1 12.58658827
298150 0.7 1 7.371378134
298151 -1.8 1 9.108509165
298155 10.03260055 7.6 1 10.03260055
298165 10.71384024 10.4 1 10.71384024
298174 11.43013946 13.6 1 11.43013946
298188 -3.6 0 7.780613347
298200 16.48794565 82.1 1 16.48794565
298246 0.1 1 8.03677925
298248 0.6 1 6.661185532

Total number of rows: 32996

Table truncated, full table size 999 Kbytes.




Supplementary file Size Download File type/resource
GSM179987.txt.gz 241.4 Kb (ftp)(http) TXT

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