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Sample GSM179995 Query DataSets for GSM179995
Status Public on Dec 01, 2007
Title Gastrocnemius_Gas570
Sample type RNA
 
Source name Mouse Gastrocnemius Strain C57BL/6J
Organism Mus musculus
Characteristics C57BL/6J. Male mice at about 120 days
Extracted molecule total RNA
Extraction protocol TRIzol extraction
Label digioxigenin
Label protocol Digoxigenin labeled cRNA was prepared according to Applied Biosystems nanoamp RT-IVT protocol
 
Hybridization protocol Hybridization was performed according to Applied Biosystems Chemiluminescence Detection Kit Protocol (PN 4339627) using 10 ug fragmented cRNA
Scan protocol Image was captured using CCD camera came with AB1700 Microarray Analyzer
Description Background strain
Data processing Quantile normalization was performed
 
Submission date Apr 02, 2007
Last update date Apr 10, 2007
Contact name Yongming Sun
E-mail(s) yongming.sun@appliedbiosystems.com
Phone 650-638-6879
Organization name Applied Biosystems
Street address 850 Lincoln Center Dr
City Foster City
State/province CA
ZIP/Postal code 94404
Country USA
 
Platform ID GPL2995
Series (1)
GSE7431 Whole genome survey of the obesity model lean congenic mice B6.C-D7Mit353

Data table header descriptions
ID_REF
VALUE same as UNF_VALUE but with flagged values removed
S/N Signal-to-noise ratio. Used for probe detectability. A probe with S/N >=3 is considered detected, otherwise, it is not detected
FLAG Quantification error code. A FLAG > 5000 indicates quantification error.
UNF_VALUE Log2 transformed quantile normalized signal intensity

Data table
ID_REF VALUE S/N FLAG UNF_VALUE
297784 12.865904 22.2 1 12.865904
297907 1.2 1 8.911529149
297912 10.81091164 7 1 10.81091164
297935 -0.1 1 8.163341387
297990 10.5817247 4.9 1 10.5817247
297993 0.2 1 7.851359663
298000 12.38316309 18.4 1 12.38316309
298038 1.1 1 8.04722599
298121 -1.9 1 8.108157217
298130 2.3 1 10.90884052
298143 9.756665253 3.9 1 9.756665253
298150 1.8 1 8.603050209
298151 0.8 1 8.006956528
298155 0.5 1 8.81248178
298165 11.48247764 9.5 1 11.48247764
298174 11.90541136 10.1 1 11.90541136
298188 2 1 8.898774876
298200 16.84137484 100.9 1 16.84137484
298246 0.7 1 8.953563269
298248 1.5 1 8.640069936

Total number of rows: 32996

Table truncated, full table size 987 Kbytes.




Supplementary file Size Download File type/resource
GSM179995.txt.gz 245.2 Kb (ftp)(http) TXT

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