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Sample GSM1800 Query DataSets for GSM1800
Status Public on Jun 27, 2002
Title E6:_U937_ wild-type_3h
Sample type RNA
 
Channel 1
Source name U937/AGS ref, 2uL, 1st strand label
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name E6:_U937_ wild-type_3h, 1st strand label
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Pathogen
Subcategory: Salmonella
E5:_U937_ wild-type_3h
Scanning Software: GenePix
Software version: Pro
Lot batch = shai071
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL183
Series (1)
GSE503 Macrophages infected with Salmonella

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 323 304 5074 6415 5781 662 634 631 5752 6382 .97 0 .181 1.116 100 100 .878 .882 1.139 1.134 1.119 339 52 45 54 73 82 .181
2 324 309 4972 5356 4727 643 629 626 4703 5329 .97 0 -.08 .944 100 98 1.052 1.057 .951 .946 .977 268 52 47 55 88 96 -.08
3 325 300 2447 2169 1532 656 637 634 1524 2158 .9 0 -.683 .609 100 100 1.597 1.605 .626 .623 .561 219 32 47 54 105 112 -.683
4 336 317 669 1155 533 642 622 619 530 1149 .65 0 -.335 .897 92 71 1.255 1.262 .797 .793 .685 339 52 45 54 119 128 -.335
5 417 328 1617 2573 1933 884 640 637 1923 2560 .84 0 .25 1.2 92 90 .837 .841 1.195 1.189 1.238 279 52 47 55 135 143 .25
6 489 336 5731 9850 9130 1080 720 716 9084 9800 .93 -100 1.625 100 100 .628 .631 1.593 1.585 1.347 155 32 47 53 150 156 .664
7 338 330 3272 4377 3711 674 666 663 3692 4355 .8 0 .174 1.02 100 100 .882 .886 1.134 1.128 2.262 164 32 48 54 166 172 .174
8 375 359 2138 3647 2924 741 723 719 2909 3628 .94 0 .444 1.297 98 98 .731 .735 1.368 1.361 1.291 278 52 47 55 179 187 .444
9 364 351 45780 42233 41522 738 711 707 41311 42018 .99 0 -.148 .908 100 100 1.103 1.108 .907 .902 .903 266 52 47 55 194 202 -.148
10 385 321 1693 2480 1827 718 653 650 1818 2467 .86 0 .103 1.05 94 90 .927 .931 1.079 1.074 1.004 266 52 47 55 209 217 .103
11 432 341 1826 55919 55257 741 662 659 54976 55634 .72 0 4.912 33.457 92 100 .033 .033 30.261 30.107 16.479 264 52 48 56 224 232 4.912
12 395 361 20591 5244 4578 722 666 663 4555 5217 .95 0 -2.177 .222 100 100 4.498 4.521 .222 .221 .223 285 52 48 56 239 247 -2.177
13 369 351 5580 5655 4977 701 678 675 4952 5626 .98 0 -.172 .889 100 100 1.121 1.127 .892 .887 .88 264 52 48 56 254 262 -.172
14 363 336 25009 19115 18473 661 642 639 18379 19018 .99 0 -.444 .746 100 100 1.354 1.361 .739 .735 .736 274 52 48 56 268 276 -.444
15 356 334 3031 2113 1458 699 655 652 1451 2102 .81 0 -1.063 .473 100 96 2.079 2.09 .481 .479 .464 282 52 48 56 283 291 -1.063
16 385 327 3764 45618 44971 708 647 644 44742 45386 .98 0 3.571 12.08 98 100 .084 .084 11.948 11.887 11.667 272 52 48 56 299 307 3.571
17 340 323 19744 39739 39053 719 686 683 38854 39537 .99 0 .977 1.949 100 100 .506 .508 1.978 1.968 1.983 275 52 48 56 313 321 .977
18 339 323 1203 12899 12284 662 615 612 12221 12833 .95 0 3.345 10.617 100 100 .098 .098 10.211 10.159 9.597 278 52 48 56 328 336 3.345
19 343 319 11951 11043 10416 637 627 624 10363 10987 .99 0 -.206 .863 100 100 1.147 1.153 .872 .867 .863 286 52 47 55 343 351 -.206
20 326 310 3362 4796 4129 708 667 664 4108 4772 .96 0 .289 1.201 98 96 .814 .818 1.228 1.222 1.18 273 52 48 56 359 367 .289

Total number of rows: 24192

Table truncated, full table size 3053 Kbytes.




Supplementary data files not provided
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