|
| Status |
Public on Oct 31, 2008 |
| Title |
ABRO_OAR27K-508_9-9-05 |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
REF
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
Centaurea maculosa rosette leaf
seed source: Missoula Montana, plant ~6 months old
|
| Biomaterial provider |
Seeds obtained from Callaway at the Unviersity of MT, Missoula
|
| Growth protocol |
Invasive Centaurea maculosa plants from Missoula, MT were grown from seed in the greenhouse for approximately six months. Seeds were germinated in 8-cm diameter pots of soil gathered from Larimer County, CO, and soils were maintained near saturation with watering.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNeasy kit (quiagen)
|
| Label |
CY3
|
| Label protocol |
Genisphere Array900
|
| |
|
| Channel 2 |
| Source name |
EXP
|
| Organism |
Arabidopsis thaliana |
| Characteristics |
Centaurea maculosa root
seed source: Missoula Montana, plant ~6 months old (used same plant as was used for leaf tissue)
|
| Biomaterial provider |
Seeds obtained from Callaway at the Unviersity of MT, Missoula
|
| Growth protocol |
Invasive Centaurea maculosa plants from Missoula, MT were grown from seed in the greenhouse for approximately six months. Seeds were germinated in 8-cm diameter pots of soil gathered from Larimer County, CO, and soils were maintained near saturation with watering.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNeasy kit (quiagen)
|
| Label |
CY5
|
| Label protocol |
Genisphere Array900
|
| |
|
| |
| Hybridization protocol |
Genisphere Array900
|
| Scan protocol |
Axon GenePix 3.0
|
| Description |
ABRO_OAR27K-508_9-9-05
|
| Data processing |
Data processing VALUE is log2 (CY5/CY3; exp/ref)
|
| |
|
| Submission date |
Apr 03, 2007 |
| Last update date |
Jul 24, 2008 |
| Contact name |
Amanda Broz |
| E-mail(s) |
akbroz@lamar.colostate.edu
|
| Phone |
970-491-4266
|
| Organization name |
Colorado State University
|
| Department |
Horticulture and Lanscape Architecture
|
| Lab |
Jorge Vivanco
|
| Street address |
1173 Campus Delivery
|
| City |
Fort Collins |
| State/province |
CO |
| ZIP/Postal code |
80523 |
| Country |
USA |
| |
|
| Platform ID |
GPL988 |
| Series (1) |
| GSE7443 |
Centaurea maculosa preliminary study |
|
