NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM180337 Query DataSets for GSM180337
Status Public on Jun 10, 2007
Title tissue culture cells (S2 only)
Sample type other
 
Source name Drosophila melanogaster tissue culture cells (S2 only)
Organism Drosophila melanogaster
Characteristics tissue culture cells (S2 only)
Extracted molecule other
Extraction protocol total RNA, ~18-26nt RNAs isolated using PAGE, ligation to adapters requires 5' monophosphate and 3' OH
Label none
Label protocol none
 
Hybridization protocol none
Scan protocol none
Description small RNAs
Data processing extraction of sequences flanked by perfect 9mer matches to the expected adjacent adapter sequences
 
Submission date Apr 03, 2007
Last update date Apr 09, 2007
Contact name James Graham Ruby
Organization name UCSF
Department Biochemistry
Lab DeRisi
Street address 1700 4th Street QB3 s404
City San Francisco
State/province CA
ZIP/Postal code 94158
Country USA
 
Platform ID GPL5061
Series (1)
GSE7448 High-throughput sequencing of small RNAs from Drosophila

Data table header descriptions
ID_REF Sequence of small RNA (in DNA)
VALUE Number of times small RNA was sequenced

Data table
ID_REF VALUE
TGTAGTGGTGCGTAACTCTATT 1
TATCTGCACTCTGCGACTTAG 4
CGAGAAGCAGCAGAGCGTGGC 1
TTAGCTGATATGGTTTCTGTC 1
ATGTGTACTAGTGAAGAGGTGT 2
AGGTNTTNTAATGGTTAANATTCCG 1
CATGAAAGAGGGTCACGTTGT 1
ATGTGTACTAGTGAAGAGGTGG 2
ATGTGTACTAGTGAAGAGGTGA 1
CAGCTGGATAACGCAGAAGACA 1
ATCGAATGGGTGTCCATTGTG 4
TGCAAATAAAATAAGAGTCGA 1
GAAAAGTAACAATACAGGACTCAT 1
ATCTCGGTGTACATTCTTAA 1
GGGCCAATTGGCAAGGAGTGC 1
GTTATGCTTCCGATAAACTG 1
CAATTGTTTCTTGCTTCTCTAC 1
GCCTTTCACGCGGGAGACCGGGGT 1
TGTATGGCTTCTAAACC 1
CCCGGGTGTCCCCTCCTAT 1

Total number of rows: 88867

Table truncated, full table size 2077 Kbytes.




Supplementary data files not provided
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap