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Sample GSM1808

Query DataSets for GSM1808

Status

Public on Jun 27, 2002

Title

E3:_U937_mock_1ha

Sample type

RNA

Channel 1

Source name

E3: U937 mock 1ha

Organism

Extracted molecule

total RNA

Channel 2

Source name

U937/AGS ref, 2uL

Organism

Extracted molecule

total RNA

Description

Category: Pathogen
Subcategory: Salmonella
E3: U937 mock 1ha
Scanning Software: GenePix
Software version: 2.1.0.35
Lot batch = shs082

Submission date

Jun 18, 2002

Last update date

Nov 21, 2005

Organization

Stanford Microarray Database (SMD)

E-mail(s)

array@genome.stanford.edu

Phone

650-498-6012

URL

http://genome-www5.stanford.edu/

Department

Stanford University, School of Medicine

Street address

300 Pasteur Drive

City

Stanford

State/province

CA

ZIP/Postal code

94305

Country

USA

Platform ID

Series (1)

Macrophages infected with Salmonella

Data table header descriptions
ID_REF
CH1B_MEAN	mean channel 1 background
CH1B_MEDIAN	median channel 1 background
CH1D_MEAN	difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN	mean channel 2 signal
CH2D_MEAN	difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN	mean of channel 2 background
CH2B_MEDIAN	median of channel 2 background
CH2BN_MEDIAN	normalized CH2B_MEDIAN
CH2DN_MEAN	normalized CH2D_MEAN
CH2IN_MEAN	normalized CH2I_MEAN
CORR	simple correlation coefficient of channel 1 and channel 2 pixels
FLAG	user defined flag (default=0)
VALUE	same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD	standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD	standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN	ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN	ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN	ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN	ratio of CH2DN_MEAN and CH1DN_MEAN
REGR	slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX	total number of background pixels
TOT_SPIX	total number of signal (spot) pixels
TOP	vertical, short-axis spot ellipse minimum pixel coordinate
BOT	vertical, short-axis spot ellipse maximum pixel coordinate
LEFT	horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT	horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE	aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF	CH1B_MEAN	CH1B_MEDIAN	CH1D_MEAN	CH2I_MEAN	CH2D_MEAN	CH2B_MEAN	CH2B_MEDIAN	CH2BN_MEDIAN	CH2DN_MEAN	CH2IN_MEAN	CORR	FLAG	VALUE	PIX_RAT2_MEDIAN	PERGTBCH1I_1SD	PERGTBCH2I_1SD	RAT1_MEAN	RAT1N_MEAN	RAT2_MEAN	RAT2N_MEAN	REGR	TOT_BPIX	TOT_SPIX	TOP	BOT	LEFT	RIGHT	UNF_VALUE
1	33	29	90	77	49	30	28	22	39	61	.729	0	-1.211	.558	96	88	1.837	2.314	.544	.432	.47	288	52	47	55	52	60	-1.211
2	34	33	88	107	78	31	29	23	62	85	.725	0	-.507	.837	10	96	1.128	1.422	.886	.703	.67	283	52	47	55	67	75	-.507
3	35	34	65	81	50	32	31	25	40	64	.677	0	-.712	.756	98	98	1.3	1.638	.769	.611	.564	293	52	47	55	83	91	-.712
4	34	33	65	96	65	32	31	25	52	76	.682	0	-.333	.97	98	98	1	1.26	1	.794	.692	279	52	47	55	98	106	-.333
5	34	33	47	61	32	30	29	23	25	48	.655	0	-.888	.762	84	62	1.469	1.851	.681	.54	.557	165	32	47	53	113	119	-.888
6	30	29	98	96	68	29	28	22	54	76	.718	0	-.861	.713	10	98	1.441	1.816	.694	.551	.597	332	52	45	54	126	135	-.861
7	29	29	56	57	27	29	30	24	21	45	.404	0	-1.386	.42	10	78	2.074	2.613	.482	.383	.298	218	32	46	53	141	148	-1.386
8	28	27	56	67	37	30	30	24	29	53	.58	0	-.931	.667	96	84	1.514	1.907	.661	.524	.526	225	32	45	52	157	164	-.931
9	29	27	204	137	107	30	30	24	85	109	.784	0	-1.264	.505	98	10	1.907	2.402	.525	.416	.424	285	52	46	54	172	180	-1.264
10	29	28	68	68	41	29	27	21	33	54	.504	0	-1.063	.508	10	90	1.659	2.09	.603	.479	.395	326	52	44	53	186	195	-1.063
11	29	29	59	155	128	29	27	21	102	123	.766	0	.784	2.234	94	10	.461	.581	2.169	1.722	1.473	324	52	45	54	201	210	.784
12	28	27	74	88	60	30	28	22	48	70	.773	0	-.636	.797	10	94	1.233	1.554	.811	.644	.717	274	52	45	53	217	225	-.636
13	29	28	82	90	62	29	28	22	49	71	.711	0	-.737	.745	10	98	1.323	1.666	.756	.6	.582	324	52	44	53	232	241	-.737
14	29	28	147	153	125	30	28	22	99	121	.72	0	-.567	.91	10	10	1.176	1.482	.85	.675	.62	248	52	45	53	247	255	-.567
15	28	26	74	85	56	30	29	23	44	67	.686	0	-.736	.686	98	10	1.321	1.665	.757	.601	.615	313	52	45	54	260	269	-.736
16	28	28	168	166	135	32	31	25	107	132	.792	0	-.649	.794	10	96	1.244	1.568	.804	.638	.697	334	52	44	53	276	285	-.649
17	30	29	362	424	395	31	29	23	313	337	.846	0	-.208	1.099	10	10	.916	1.155	1.091	.866	.912	422	80	44	54	292	302	-.208
18	33	31	93	124	90	36	34	27	71	98	.689	0	-.381	1	10	98	1.033	1.302	.968	.768	.719	305	52	44	53	307	316	-.381
19	31	29	130	118	86	34	32	25	68	94	.762	0	-.93	.717	10	94	1.512	1.905	.662	.525	.556	266	52	44	52	322	330	-.93
20	36	27	65	97	67	44	30	24	53	77	.071	0	-.29	.957	0	10	.97	1.222	1.031	.818	.445	328	52	44	53	336	345	-.29

Total number of rows: 24192

Table truncated, full table size 2716 Kbytes.

Supplementary data files not provided

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