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Sample GSM1809 Query DataSets for GSM1809
Status Public on Jun 27, 2002
Title E3:_U937_mock_2ha
Sample type RNA
 
Channel 1
Source name E3: U937 mock 2ha
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name U937/AGS ref, 2uL
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description Category: Pathogen
Subcategory: Salmonella
E3: U937 mock 2ha
Scanning Software: GenePix
Software version: 2.1.0.35
Lot batch = shs085
 
Submission date Jun 18, 2002
Last update date Nov 21, 2005
Organization Stanford Microarray Database (SMD)
E-mail(s) array@genome.stanford.edu
Phone 650-498-6012
URL http://genome-www5.stanford.edu/
Department Stanford University, School of Medicine
Street address 300 Pasteur Drive
City Stanford
State/province CA
ZIP/Postal code 94305
Country USA
 
Platform ID GPL181
Series (1)
GSE503 Macrophages infected with Salmonella

Data table header descriptions
ID_REF
CH1B_MEAN mean channel 1 background
CH1B_MEDIAN median channel 1 background
CH1D_MEAN difference between CH1I_MEAN and CH1B_MEAN
CH2I_MEAN mean channel 2 signal
CH2D_MEAN difference of CH2I_MEAN and CH2B_MEAN
CH2B_MEAN mean of channel 2 background
CH2B_MEDIAN median of channel 2 background
CH2BN_MEDIAN normalized CH2B_MEDIAN
CH2DN_MEAN normalized CH2D_MEAN
CH2IN_MEAN normalized CH2I_MEAN
CORR simple correlation coefficient of channel 1 and channel 2 pixels
FLAG user defined flag (default=0)
VALUE same as UNF_VALUE but with flagged values removed
PIX_RAT2_MEDIAN
PERGTBCH1I_1SD standard deviation of fraction of pixels greater than CH1B_MEAN
PERGTBCH2I_1SD standard deviation of fraction of pixels greater than CH2B_MEAN
RAT1_MEAN ratio of CH1D_MEAN to CH2D_MEAN
RAT1N_MEAN ratio of CH1DN_MEAN to CH2DN_MEAN
RAT2_MEAN ratio of CH2D_MEAN to CH1D_MEAN
RAT2N_MEAN ratio of CH2DN_MEAN and CH1DN_MEAN
REGR slope of the simple regression line of channel 2 to channel 1 pixels
TOT_BPIX total number of background pixels
TOT_SPIX total number of signal (spot) pixels
TOP vertical, short-axis spot ellipse minimum pixel coordinate
BOT vertical, short-axis spot ellipse maximum pixel coordinate
LEFT horizontal, long-axis spot ellipse minimum pixel coordinate
RIGHT horizontal, long-axis spot ellipse maximum pixel coordinate
UNF_VALUE aka LOG_RAT2N_MEAN, or log10 of ratio of CH2DN_MEAN and CH1DN_MEAN

Data table
ID_REF CH1B_MEAN CH1B_MEDIAN CH1D_MEAN CH2I_MEAN CH2D_MEAN CH2B_MEAN CH2B_MEDIAN CH2BN_MEDIAN CH2DN_MEAN CH2IN_MEAN CORR FLAG VALUE PIX_RAT2_MEDIAN PERGTBCH1I_1SD PERGTBCH2I_1SD RAT1_MEAN RAT1N_MEAN RAT2_MEAN RAT2N_MEAN REGR TOT_BPIX TOT_SPIX TOP BOT LEFT RIGHT UNF_VALUE
1 15 15 48 53 29 25 24 13 16 29 .607 0 -1.599 .531 10 86 1.655 3.029 .604 .33 .467 263 52 56 64 24 32 -1.599
2 16 16 46 62 38 25 24 13 21 34 .677 0 -1.147 .822 10 90 1.211 2.215 .826 .451 .655 294 52 56 64 39 47 -1.147
3 17 17 39 54 30 25 24 13 16 30 .585 0 -1.25 .81 98 84 1.3 2.379 .769 .42 .6 372 52 54 63 54 63 -1.25
4 19 18 43 63 36 27 27 15 20 34 .608 0 -1.128 .905 10 90 1.194 2.186 .837 .457 .634 284 52 55 63 71 79 -1.128
5 17 17 34 50 22 27 28 15 12 27 .479 0 -1.5 .818 96 78 1.545 2.828 .647 .354 .382 164 32 56 62 87 93 -1.5
6 17 16 61 69 43 27 26 14 23 38 .705 0 -1.376 .714 10 98 1.419 2.596 .705 .385 .547 279 52 55 63 100 108 -1.376
7 16 16 24 48 23 27 25 14 13 26 .474 0 -.933 1.143 92 78 1.043 1.91 .958 .524 .5 269 52 54 62 115 123 -.933
8 16 16 22 49 24 26 25 14 13 27 .499 0 -.746 .96 96 78 .917 1.678 1.091 .596 .612 269 52 54 62 130 138 -.746
9 16 16 138 71 45 27 26 14 25 39 .75 0 -2.489 .305 10 90 3.067 5.612 .326 .178 .312 274 52 53 61 145 153 -2.489
10 16 16 34 54 27 27 27 15 15 30 .578 0 -1.204 .808 98 88 1.259 2.304 .794 .434 .548 282 52 53 61 160 168 -1.204
11 16 16 53 72 46 27 26 14 25 39 .688 0 -1.076 .882 10 94 1.152 2.108 .868 .474 .628 264 52 53 61 176 184 -1.076
12 15 15 56 63 36 27 27 15 20 34 .711 0 -1.509 .629 10 98 1.556 2.847 .643 .351 .548 325 52 52 61 189 198 -1.509
13 16 15 48 56 30 27 26 14 16 31 .624 0 -1.55 .594 10 76 1.6 2.928 .625 .342 .521 334 52 51 60 204 213 -1.55
14 16 16 93 84 57 27 27 15 31 46 .774 0 -1.578 .645 10 96 1.632 2.986 .613 .335 .511 274 52 52 60 220 228 -1.578
15 16 16 40 59 32 27 27 15 17 32 .532 0 -1.194 .727 88 81 1.25 2.288 .8 .437 .477 385 80 52 62 234 244 -1.194
16 16 16 84 82 55 27 27 15 30 45 .762 0 -1.483 .64 95 98 1.527 2.795 .655 .358 .528 357 80 51 61 249 259 -1.483
17 16 15 437 188 162 26 26 14 89 103 .879 0 -2.303 .346 95 97 2.698 4.936 .371 .203 .324 392 80 51 61 263 273 -2.303
18 17 16 54 76 50 27 26 14 27 42 .755 0 -.983 .867 98 94 1.08 1.976 .926 .506 .782 325 52 51 60 279 288 -.983
19 16 15 95 68 42 26 26 14 23 37 .683 0 -2.049 .473 10 96 2.262 4.139 .442 .242 .36 326 52 50 59 293 302 -2.049
20 13 13 39 51 26 25 25 14 14 28 .589 0 -1.457 .654 10 86 1.5 2.745 .667 .364 .546 266 52 51 59 309 317 -1.457

Total number of rows: 24192

Table truncated, full table size 2717 Kbytes.




Supplementary data files not provided
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