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Sample GSM182253 Query DataSets for GSM182253
Status Public on Jun 01, 2007
Title Saccharomyces cerevisiae MA-A3 MA-A1
Sample type RNA
 
Channel 1
Source name Saccharomyces cerevisiae MA-A3
Organism Saccharomyces cerevisiae
Characteristics Saccharomyces cerevisiae MA-A3
Extracted molecule total RNA
Extraction protocol See Townsend, Cavalieri and Hartl 2003, PMID: 12716989: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=search&term=12716989
Label Cy5
Label protocol Genisphere 3DNA System
 
Channel 2
Source name Saccharomyces cerevisiae MA-A1
Organism Saccharomyces cerevisiae
Characteristics Saccharomyces cerevisiae MA-A1
Extracted molecule total RNA
Extraction protocol See Townsend, Cavalieri and Hartl 2003, PMID: 12716989: http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=PubMed&cmd=search&term=12716989
Label Cy3
Label protocol Genisphere 3DNA System
 
 
Hybridization protocol Genisphere 3DNA System
Scan protocol Axon scnanner and Genepix
Description see Landry et al.
Data processing Spots of bad quality were given negative flags
 
Submission date Apr 16, 2007
Last update date Jun 01, 2007
Contact name Christian Landry
E-mail(s) clandry@post.harvard.edu
Organization name Harvard University
Department OEB
Lab Hartl Laboratory
Street address 16 Divinity avenue
City Cambridge
State/province MA
ZIP/Postal code 02138
Country USA
 
Platform ID GPL5092
Series (1)
GSE7537 Mutation accumulation and the yeast transcriptome

Data table header descriptions
ID_REF Platform ID
F635_Median median spot intensity at 635
B635_Median median background intensity at 635
F532_Median median spot intensity at 532
B532_Median median background intensity at 532
Flags zero signififies pass, less than zero is a bad spot
VALUE same as UNF_VALUE but with flagged values removed
UNF_VALUE log ratio of median F635 divided by F532

Data table
ID_REF F635_Median B635_Median F532_Median B532_Median Flags VALUE UNF_VALUE
1 1259 39 1737 66 0 -0.46 -0.46
2 1361 39 1100 70 0 0.31 0.31
3 7191 39 8254 70 0 -0.20 -0.20
4 19782 41 25353 71 0 -0.36 -0.36
5 1119 41 1368 72 0 -0.29 -0.29
6 12006 41 29518 71 0 -1.30 -1.30
7 1252 43 1723 70 0 -0.46 -0.46
8 1074 43 943 73 0 0.19 0.19
9 6247 43 7618 75 0 -0.29 -0.29
10 24500 45 31100 79 0 -0.34 -0.34
11 973 44 1271 76 0 -0.39 -0.39
12 10305 44 25292 74 0 -1.30 -1.30
13 1050 42 1505 74 0 -0.52 -0.52
14 997 42 781 72 0 0.35 0.35
15 6712 42 7337 72 0 -0.13 -0.13
16 23558 43 29908 74 0 -0.34 -0.34
17 1181 42 1567 73 0 -0.41 -0.41
18 10078 43 26073 74 0 -1.37 -1.37
19 943 44 1302 74 0 -0.47 -0.47
20 927 42 780 73 0 0.25 0.25

Total number of rows: 7744

Table truncated, full table size 250 Kbytes.




Supplementary data files not provided

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