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Status
Public on Feb 05, 2008
Title
Substantia nigra
Sample type
SAGE
Anchor
Sau3A
Tag Count
77651
Tag Length
15
Source name
Wild-type mouse substantia nigra
Organism
Mus musculus
Characteristics
Strain: C57BL/6; Gender: male; Age: 8-12 weeks; Tissue: brain, substantia nigra.
Extracted molecule
polyA RNA
Extraction protocol
Virlon B, Cheval L, Buhler JM, Billon E, Doucet A, Elalouf JM. 1999. Serial microanalysis of renal transcriptomes. Proc Natl Acad Sci U S A. 96:15286-91.
Description
Data provided after linker removal.
Submission date
Apr 24, 2007
Last update date
Nov 19, 2008
Contact name
Jean-Marc Elalouf
E-mail(s)
jean-marc.elalouf@cea.fr
Phone
(33) 1 69088022
Fax
(33) 1 69084712
Organization name
CEA Saclay
Department
IBITEC-S
Lab
Laboratoire de PhysioGénomique
Street address
City
91191 Gif/ Yvette Cedex
ZIP/Postal code
91191
Country
France
Platform ID
GPL5119
Series (1)
GSE7593
LongSAGE analysis of wild-type mouse brain regions
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
TTTATAATTTGAGAG
2094
26966.81
AACAAATCTCCTAGG
1470
18930.86
AACTTATACATCTTC
677
8718.50
ACAAATCTCCTAGGC
593
7636.73
TGAGTTCAGACCGGA
484
6233.02
AGACAGTCTTGGAGT
457
5885.31
TGCTTCAATAATTTA
408
5254.28
AAACAACCCAACAGG
365
4700.52
AAACTTTACCATTAT
317
4082.37
TTAAAAAAAAAAAAA
316
4069.49
CTGGTAATGCACTTT
279
3593.00
TTATAATTTGAGAGG
250
3219.53
ATGCAGACTGTTCCT
229
2949.09
CCACTGCACATAGGA
227
2923.34
TGACTCCCTCTTCTG
222
2858.95
AACACCGCAACCTTT
182
2343.82
AGGGGGACGTGAACT
180
2318.06
CAAAAAGATAAAAGG
174
2240.80
TTTGCCGGCAAGCAG
161
2073.38
CACAAATTTCAGAGC
155
1996.11
Total number of rows: 30394 Table truncated, full table size 714 Kbytes .Supplementary data files not provided
Processed data included within Sample table