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Sample GSM183652 Query DataSets for GSM183652
Status Public on Feb 05, 2008
Title Substantia nigra
Sample type SAGE
Anchor Sau3A
Tag Count 77651
Tag Length 15
 
Source name Wild-type mouse substantia nigra
Organism Mus musculus
Characteristics Strain: C57BL/6; Gender: male; Age: 8-12 weeks; Tissue: brain, substantia nigra.
Extracted molecule polyA RNA
Extraction protocol Virlon B, Cheval L, Buhler JM, Billon E, Doucet A, Elalouf JM. 1999. Serial microanalysis of renal transcriptomes. Proc Natl Acad Sci U S A. 96:15286-91.
 
Description Data provided after linker removal.
 
Submission date Apr 24, 2007
Last update date Nov 19, 2008
Contact name Jean-Marc Elalouf
E-mail(s) jean-marc.elalouf@cea.fr
Phone (33) 1 69088022
Fax (33) 1 69084712
Organization name CEA Saclay
Department IBITEC-S
Lab Laboratoire de PhysioGénomique
Street address
City 91191 Gif/ Yvette Cedex
ZIP/Postal code 91191
Country France
 
Platform ID GPL5119
Series (1)
GSE7593 LongSAGE analysis of wild-type mouse brain regions

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
TTTATAATTTGAGAG 2094 26966.81
AACAAATCTCCTAGG 1470 18930.86
AACTTATACATCTTC 677 8718.50
ACAAATCTCCTAGGC 593 7636.73
TGAGTTCAGACCGGA 484 6233.02
AGACAGTCTTGGAGT 457 5885.31
TGCTTCAATAATTTA 408 5254.28
AAACAACCCAACAGG 365 4700.52
AAACTTTACCATTAT 317 4082.37
TTAAAAAAAAAAAAA 316 4069.49
CTGGTAATGCACTTT 279 3593.00
TTATAATTTGAGAGG 250 3219.53
ATGCAGACTGTTCCT 229 2949.09
CCACTGCACATAGGA 227 2923.34
TGACTCCCTCTTCTG 222 2858.95
AACACCGCAACCTTT 182 2343.82
AGGGGGACGTGAACT 180 2318.06
CAAAAAGATAAAAGG 174 2240.80
TTTGCCGGCAAGCAG 161 2073.38
CACAAATTTCAGAGC 155 1996.11

Total number of rows: 30394

Table truncated, full table size 714 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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