GEO help: Mouse over screen elements for information.
Status
Public on Feb 05, 2008
Title
Ventral tegmental area
Sample type
SAGE
Anchor
Sau3A
Tag Count
86247
Tag Length
15
Source name
Wild-type mouse ventral tegmental area
Organism
Mus musculus
Characteristics
Strain: C57BL/6; Gender: male; Age: 8-12 weeks; Tissue: brain, ventral tegmental area.
Extracted molecule
polyA RNA
Extraction protocol
Virlon B, Cheval L, Buhler JM, Billon E, Doucet A, Elalouf JM. 1999. Serial microanalysis of renal transcriptomes. Proc Natl Acad Sci U S A. 96:15286-91.
Description
Data provided after linker removal.
Submission date
Apr 24, 2007
Last update date
Nov 19, 2008
Contact name
Jean-Marc Elalouf
E-mail(s)
jean-marc.elalouf@cea.fr
Phone
(33) 1 69088022
Fax
(33) 1 69084712
Organization name
CEA Saclay
Department
IBITEC-S
Lab
Laboratoire de PhysioGénomique
Street address
City
91191 Gif/ Yvette Cedex
ZIP/Postal code
91191
Country
France
Platform ID
GPL5119
Series (1)
GSE7593
LongSAGE analysis of wild-type mouse brain regions
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
TTTATAATTTGAGAG
1679
19467.34
AACAAATCTCCTAGG
1384
16046.93
TGCTTCAATAATTTA
769
8916.25
AACTTATACATCTTC
601
6968.36
TGACTCCCTCTTCTG
521
6040.79
AGACAGTCTTGGAGT
502
5820.49
TGAGTTCAGACCGGA
460
5333.52
AAACAACCCAACAGG
440
5101.63
CCACTGCACATAGGA
394
4568.27
AAACTTTACCATTAT
367
4255.22
TGATGCCCTCTTCTG
354
4104.49
TGACGCCCTCTTCTG
321
3721.87
TTTGCCGGCAAGCAG
292
3385.63
ACAAATCTCCTAGGC
278
3223.30
AGTTAATTTGTATGT
254
2945.03
TAACCATAGCTTTAT
235
2724.73
TTATAATTTGAGAGG
221
2562.41
CCCACTTATGTGACT
217
2516.03
TTAAAAAAAAAAAAA
208
2411.68
AACACCGCAACCTTT
195
2260.95
Total number of rows: 32397 Table truncated, full table size 761 Kbytes .Supplementary data files not provided
Processed data included within Sample table