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Sample GSM183653 Query DataSets for GSM183653
Status Public on Feb 05, 2008
Title Ventral tegmental area
Sample type SAGE
Anchor Sau3A
Tag Count 86247
Tag Length 15
 
Source name Wild-type mouse ventral tegmental area
Organism Mus musculus
Characteristics Strain: C57BL/6; Gender: male; Age: 8-12 weeks; Tissue: brain, ventral tegmental area.
Extracted molecule polyA RNA
Extraction protocol Virlon B, Cheval L, Buhler JM, Billon E, Doucet A, Elalouf JM. 1999. Serial microanalysis of renal transcriptomes. Proc Natl Acad Sci U S A. 96:15286-91.
 
Description Data provided after linker removal.
 
Submission date Apr 24, 2007
Last update date Nov 19, 2008
Contact name Jean-Marc Elalouf
E-mail(s) jean-marc.elalouf@cea.fr
Phone (33) 1 69088022
Fax (33) 1 69084712
Organization name CEA Saclay
Department IBITEC-S
Lab Laboratoire de PhysioGénomique
Street address
City 91191 Gif/ Yvette Cedex
ZIP/Postal code 91191
Country France
 
Platform ID GPL5119
Series (1)
GSE7593 LongSAGE analysis of wild-type mouse brain regions

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
TTTATAATTTGAGAG 1679 19467.34
AACAAATCTCCTAGG 1384 16046.93
TGCTTCAATAATTTA 769 8916.25
AACTTATACATCTTC 601 6968.36
TGACTCCCTCTTCTG 521 6040.79
AGACAGTCTTGGAGT 502 5820.49
TGAGTTCAGACCGGA 460 5333.52
AAACAACCCAACAGG 440 5101.63
CCACTGCACATAGGA 394 4568.27
AAACTTTACCATTAT 367 4255.22
TGATGCCCTCTTCTG 354 4104.49
TGACGCCCTCTTCTG 321 3721.87
TTTGCCGGCAAGCAG 292 3385.63
ACAAATCTCCTAGGC 278 3223.30
AGTTAATTTGTATGT 254 2945.03
TAACCATAGCTTTAT 235 2724.73
TTATAATTTGAGAGG 221 2562.41
CCCACTTATGTGACT 217 2516.03
TTAAAAAAAAAAAAA 208 2411.68
AACACCGCAACCTTT 195 2260.95

Total number of rows: 32397

Table truncated, full table size 761 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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