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Sample GSM183799 Query DataSets for GSM183799
Status Public on Jun 05, 2007
Title Lymphoma_TKO_7 (GPL2884)
Sample type genomic
 
Channel 1
Source name Atm-/-,mTerc-/-,p53-/- mouse lymphoma
Organism Mus musculus
Characteristics Strain:C57BL/6; lymphoma
Extracted molecule genomic DNA
Extraction protocol Total DNA extracted using PureGene kit following manufacturer's instructions (Gentra Systems).
Label cy3, cy5
Label protocol Genomic DNA Labeling Kit (Enzo Life Sciences, Farmingdale, NY) was used as per manufacturer's protocol.
 
Channel 2
Source name normal mouse reference
Organism Mus musculus
Characteristics Strain:C57BL/6
Extracted molecule genomic DNA
Extraction protocol Total DNA extracted using PureGene kit following manufacturer's instructions (Gentra Systems).
Label cy5, cy3
Label protocol Genomic DNA Labeling Kit (Enzo Life Sciences, Farmingdale, NY) was used as per manufacturer's protocol.
 
 
Hybridization protocol Genomic DNA hybridization to Agilent CGH arrays were performed as per manufacturer’s protocol (http://www.agilent.com)
Scan protocol Scanning was performed as per manufacturer's protocol (http://www.agilent.com)
Description Lymphoma samples from Atm-/-, mTerc-/-, p53-/- triple knock-out mice are compared to reference DNA from healthy mice of the same line.
Data processing LOWESS normalized, background subtracted data obtained from log2 (test/reference). Agilent software was used.
 
Submission date Apr 24, 2007
Last update date Sep 14, 2007
Contact name bin feng
Organization name dfci
Street address 44 binney street
City boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL2884
Series (2)
GSE7600 Atm-/-,mTerc-/-,p53-/- triple knock-out lymphoma vs normal mouse DNA (GPL2884)
GSE7615 Cancer Process Study

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (test/reference)

Data table
ID_REF VALUE
26186 -0.04751495
22240 -0.02803521
19370 0.01291375
31487 -0.08360381
38261
5475 -0.1944335
1859 -0.2340272
3325 -0.3404497
1899 -0.1859588
13184 -0.09706602
27786 0.03398381
26199 -0.01650828
32918
12706 -0.180174
12812 -0.0496593
39069 -0.01230015
39829 0.04095882
3177 -0.2943218
31446 0.06412231
7613 -0.2392206

Total number of rows: 42090

Table truncated, full table size 679 Kbytes.




Supplementary file Size Download File type/resource
GSM183799_US22502705_251349010197_S01_44k_CGH_0605.txt.gz 12.4 Mb (ftp)(http) TXT
GSM183799_US22502705_251349010222_S01_44k_CGH_0605.txt.gz 12.5 Mb (ftp)(http) TXT
Processed data included within Sample table

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