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Sample GSM183953 Query DataSets for GSM183953
Status Public on Jun 05, 2007
Title Colon_64
Sample type genomic
 
Channel 1
Source name Colon
Organism Homo sapiens
Characteristics tumor
Extracted molecule genomic DNA
Extraction protocol Total DNA extracted using PureGene kit following manufacturer's instructions (Gentra Systems).
Label cy3
Label protocol Genomic DNA Labeling Kit (Enzo Life Sciences, Farmingdale, NY) was used as per manufacturer's protocol.
 
Channel 2
Source name Normal Human DNA
Organism Homo sapiens
Characteristics Reference DNA
Extracted molecule genomic DNA
Extraction protocol Total DNA extracted using PureGene kit following manufacturer's instructions (Gentra Systems).
Label cy5
Label protocol Genomic DNA Labeling Kit (Enzo Life Sciences, Farmingdale, NY) was used as per manufacturer's protocol.
 
 
Hybridization protocol Genomic DNA hybridization to Agilent CGH arrays were performed as per manufacturer’s protocol (http://www.agilent.com)
Scan protocol Scanning was performed as per manufacturer's protocol (http://www.agilent.com)
Description expression arrays were used for CGH
Data processing LOWESS normalized, background subtracted data obtained from log2 (Cy3/Cy5). Agilent software was used.
 
Submission date Apr 24, 2007
Last update date Sep 14, 2007
Contact name bin feng
Organization name dfci
Street address 44 binney street
City boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL887
Series (2)
GSE7604 Human Colon tumor vs Normal Human DNA
GSE7615 Cancer Process Study

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (test/reference)

Data table
ID_REF VALUE
7732 -0.228656728
17321 -0.494121632
9086 0.015500317
11866 -0.103286959
12817 -0.145762986
15916 -0.513080031
6231 0.225033695
13103 -0.641895757
9144 -0.609565843
18143 -0.526779873
16745 -0.037661488
6875 -0.399470585
12724 0.112973485
3642 -0.102110626
16795 -0.294240137
22038 -0.007688528
17048 -0.351701753
7399 -0.343602326
21523 -0.118771579
22421

Total number of rows: 16070

Table truncated, full table size 269 Kbytes.




Supplementary file Size Download File type/resource
GSM183953.txt.gz 6.3 Mb (ftp)(http) TXT
Processed data included within Sample table

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