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Sample GSM183959 Query DataSets for GSM183959
Status Public on Jun 05, 2007
Title Colon_70
Sample type genomic
 
Channel 1
Source name Colon
Organism Homo sapiens
Characteristics tumor
Extracted molecule genomic DNA
Extraction protocol Total DNA extracted using PureGene kit following manufacturer's instructions (Gentra Systems).
Label cy3, cy5
Label protocol Genomic DNA Labeling Kit (Enzo Life Sciences, Farmingdale, NY) was used as per manufacturer's protocol.
 
Channel 2
Source name Normal Human DNA
Organism Homo sapiens
Characteristics Reference DNA
Extracted molecule genomic DNA
Extraction protocol Total DNA extracted using PureGene kit following manufacturer's instructions (Gentra Systems).
Label cy5, cy3
Label protocol Genomic DNA Labeling Kit (Enzo Life Sciences, Farmingdale, NY) was used as per manufacturer's protocol.
 
 
Hybridization protocol Genomic DNA hybridization to Agilent CGH arrays were performed as per manufacturer’s protocol (http://www.agilent.com)
Scan protocol Scanning was performed as per manufacturer's protocol (http://www.agilent.com)
Description expression arrays were used for CGH
Data processing LOWESS normalized, background subtracted data obtained from log2 (test/reference). Agilent software was used.
 
Submission date Apr 24, 2007
Last update date Sep 14, 2007
Contact name bin feng
Organization name dfci
Street address 44 binney street
City boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL887
Series (2)
GSE7604 Human Colon tumor vs Normal Human DNA
GSE7615 Cancer Process Study

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (test/reference)

Data table
ID_REF VALUE
7732 -0.112603512
17321 -0.070904323
9086 -0.137165587
11866 -0.319966563
12817 0.209272628
15916 0.018889745
6231 2.642800312
13103 -0.015946844
9144 0.02843785
18143 0.066541413
16745 -0.039440932
6875 0.047999901
12724 0.043470865
3642 -0.366547763
16795 -0.145388591
22038 -0.027813767
17048 -0.273095928
7399 -0.006204533
21523 -0.572904669
22421

Total number of rows: 16070

Table truncated, full table size 278 Kbytes.




Supplementary file Size Download File type/resource
GSM183959_US23502325_251209723149_S01_A01.txt.gz 6.4 Mb (ftp)(http) TXT
GSM183959_swapUS23502325_251209723148_S01_A01.txt.gz 6.4 Mb (ftp)(http) TXT
Processed data included within Sample table

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