|
| Status |
Public on Aug 01, 2015 |
| Title |
Tri6_Mutant-Replicate-2 |
| Sample type |
SRA |
| |
|
| Source name |
Tri6_Mutant cells
|
| Organism |
Fusarium graminearum |
| Characteristics |
strain: Tri6_Mutant
genotype/variation: Tri6_Mutant
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol (Invitrogen, USA) and InviTrap Spin Cell RNA mini kit (Invitek, Germany) were used for RNA isolation
Illumina DGE Tag Profiling NlaIII Sample Prep Kit
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina Genome Analyzer |
| |
|
| Data processing |
ELAND was used for read alignment
DESeq was used for data normalization and relative comparison between strains
Genome_build: Fusarium graminearum strain PH-1
Supplementary_files_format_and_content: delimited text files were generated for TAG COUNT and GENE COUNT data
|
| |
|
| Submission date |
Jul 31, 2015 |
| Last update date |
Aug 01, 2015 |
| Contact name |
Rajagopal Subramaniam |
| E-mail(s) |
subramaniamra@agr.gc.ca
|
| Organization name |
Agriculture and Agri-Food Canada
|
| Street address |
960 Carling
|
| City |
Ottawa |
| State/province |
Ontario |
| ZIP/Postal code |
K1A0C6 |
| Country |
Canada |
| |
|
| Platform ID |
GPL20760 |
| Series (1) |
| GSE71604 |
Leucine metabolism regulates TRI6 expression and affects deoxynivalenol production and virulence in Fusarium graminearum |
|
| Relations |
| BioSample |
SAMN03946215 |
