|
| Status |
Public on Aug 31, 2016 |
| Title |
Am_FW_pre_immune_rep1 |
| Sample type |
SRA |
| |
|
| Source name |
fore wing buds from honey bee larvae
|
| Organism |
Apis mellifera |
| Characteristics |
developmental stage: early fifth larval instar
tag: fore wing buds
|
| Growth protocol |
wing buds were isolated from early fifth instar larvae of honey bee colonies. For details pl see Prasad N, Tarikere S, Khanale D, Habib F, Shashidhara LS. Evolution of insect hindwing morphology: A comparitive genomic analysis of targets of Hox protein Ultrabithorax (submitted)
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
pl see Prasad N, Tarikere S, Khanale D, Habib F, Shashidhara LS. Evolution of insect hindwing morphology: A comparitive genomic analysis of targets of Hox protein Ultrabithorax (submitted) for complete details.
libraries were prepared by using ChIP-seq DNA sample preparation kit (Illumina # IP- 102 -1001)
|
| |
|
| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer IIx |
| |
|
| Description |
1st biological replicate of pre immune ChIP (fore wing)
|
| Data processing |
The short reads were aligned to the genome of Apis mellifera verison 2.0 using bowtie.
Peaks were identified from the aligned files using MACS (version 1.4)
Genome_build: Amel2.0
|
| |
|
| Submission date |
Aug 07, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Naveen Prasad |
| E-mail(s) |
novino11@gmail.com
|
| Organization name |
IISER Pune
|
| Department |
Biology
|
| Street address |
Dr Homi Bhaba Road
|
| City |
Pune |
| State/province |
Maharashtra |
| ZIP/Postal code |
411008 |
| Country |
India |
| |
|
| Platform ID |
GPL13725 |
| Series (1) |
| GSE71847 |
Evolution of insect hindwing morphology: A comparative genomic analysis of targets of Hox protein Ultrabithorax |
|
| Relations |
| SRA |
SRX1136616 |
| BioSample |
SAMN03980093 |
