|
| Status |
Public on Jul 22, 2016 |
| Title |
Amyloidosis sample 111 |
| Sample type |
genomic |
| |
|
| Source name |
Bone marrow
|
| Organism |
Homo sapiens |
| Characteristics |
diagnosis: Amyloidosis
cell type: Clonal plasma cells
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
not provided
|
| Label |
biotin
|
| Label protocol |
Labelling and hybridizations were performed according to protocols from Affymetrix
|
| |
|
| Hybridization protocol |
DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
|
| Scan protocol |
The Arrays were then washed using Affymetrix fluidics stations, and scanned using the Gene Chip Scanner 3000.
|
| Data processing |
ChAS console from Affymetrix was used to assess genome wide copy number frequencies
primary data description: Weighted Log2 Ratios from ChAS console
|
| |
|
| Submission date |
Sep 15, 2015 |
| Last update date |
Jul 22, 2016 |
| Contact name |
Bruno Paiva |
| E-mail(s) |
bpaiva@unav.es
|
| Organization name |
Clinica Universidad de Navarra
|
| Street address |
Av. Pio XII, 55
|
| City |
Pamplona |
| ZIP/Postal code |
31008 |
| Country |
Spain |
| |
|
| Platform ID |
GPL18637 |
| Series (2) |
| GSE73041 |
Phenotypic, transcriptomic and genomic characterization of clonal plasma cells in light chain amyloidosis [Copy number analysis] |
| GSE73042 |
Phenotypic, transcriptomic and genomic characterization of clonal plasma cells in light chain amyloidosis |
|
