|
| Status |
Public on Feb 17, 2016 |
| Title |
RNAseq_Ctrl_3 |
| Sample type |
SRA |
| |
|
| Source name |
control_brain
|
| Organism |
Homo sapiens |
| Characteristics |
disease status: control
tissue: brain
tissue subtype: dorsolateral prefrontal cortex
|
| Growth protocol |
Frozen brain tissue from control and advanced AD subjects was obtained from the Mount Sinai Brain Bank.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Trizol extraction
Illumina High-throughput TruSeq RNA Sample preparation: ribominus selection (Invitrogen)
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2500 |
| |
|
| Description |
C3
control subject
|
| Data processing |
alignment with Tophat (unambigous mapping; mean inner distance: 20; st.dev.: 20)
inference of exon junctions (Bayesian method)
Genome_build: hg18
Supplementary_files_format_and_content: txt file containing geneID (Entrez) and symbol, raw reads and rpkm values
|
| |
|
| Submission date |
Sep 16, 2015 |
| Last update date |
May 15, 2019 |
| Contact name |
Claudia Scheckel |
| E-mail(s) |
claudia.scheckel@gmail.com
|
| Organization name |
University Hospital Zurich
|
| Department |
Institute of Neuropathology
|
| Street address |
Schmelzbergstrasse 12
|
| City |
Zurich |
| State/province |
NY |
| ZIP/Postal code |
8091 |
| Country |
Switzerland |
| |
|
| Platform ID |
GPL16791 |
| Series (2) |
| GSE53697 |
RNAseq in Alzheimer's Disease patients |
| GSE53699 |
nELAVL HITS-CLIP and RNA-seq in Alzheimer's Disease patients and IMR-32 neuroblastoma cells |
|
| Relations |
| BioSample |
SAMN04090358 |
| SRA |
SRX1250557 |
