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Sample GSM1887768 Query DataSets for GSM1887768
Status Public on Oct 17, 2017
Title Control 0hr III
Sample type RNA
 
Source name Primary adult human keratinocytes
Organism Homo sapiens
Characteristics type: Primary cell (Human Keratinocyte)
treatment: control
tissue: epidermis
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description replicate 3
Data processing The data were normalised using quantile normalisation with MatLab
 
Submission date Sep 17, 2015
Last update date Oct 17, 2017
Contact name ajay Mishra
E-mail(s) ajay.mishra@kcl.ac.uk
Organization name King's College London
Department Centre for Stem Cells and Regenerative Medicine
Street address Great Maze Pond
City London
ZIP/Postal code SE1 9RT
Country United Kingdom
 
Platform ID GPL10904
Series (1)
GSE73147 A protein phosphatase network controls the temporal and spatial dynamics of differentiation commitment in human epidermis

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
7A5 28.1 0.19351
A1BG 23.9 0.13832
A1CF 7.3 0.37311
A26C3 1 0.37404
A2BP1 -28.2 0.95877
A2LD1 395.5 0
A2M -44.2 0.88182
A2ML1 1346.7 0
A3GALT2 3.9 0.50647
A4GALT 268.1 0
A4GNT 13.7 0.37922
AAA1 -2.5 0.58601
AAAS 85.8 0.0039
AACS 185.6 0
AACSL 112.2 0
AADAC 14.6 0.36753
AADACL1 274.1 0
AADACL2 19.6 0.29481
AADACL3 -16.3 0.69091
AADACL4 -33.5 0.80909

Total number of rows: 34685

Table truncated, full table size 675 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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